Variant report

Variant	rs2525522
Chromosome Location	chr14:69003966-69003967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69003922..69007873-chr14:69256897..69260047,3	MCF-7	breast:
2	chr14:69001801..69004663-chr14:69006865..69008433,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1023529	0.90[ASN][1000 genomes]
rs1476586	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1859302	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2040782	0.83[AMR][1000 genomes]
rs2079211	0.86[AMR][1000 genomes]
rs2107341	0.88[AMR][1000 genomes]
rs2158358	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2247048	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2525521	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2525523	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2525524	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2525525	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2525526	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2525527	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2842325	0.83[AMR][1000 genomes]
rs2842329	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2842331	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2842338	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs757370	0.86[AMR][1000 genomes]
rs916962	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs929285	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1048064	chr14:68991041-69012766	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68996200-69007800	Weak transcription	Stomach Mucosa	stomach
2	chr14:69002400-69016600	Weak transcription	Gastric	stomach
3	chr14:69002600-69004800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:69002600-69006600	Weak transcription	Ovary	ovary
5	chr14:69002800-69005600	Weak transcription	A549	lung
6	chr14:69002800-69006000	Weak transcription	Esophagus	oesophagus
7	chr14:69002800-69006000	Weak transcription	Placenta	Placenta
8	chr14:69002800-69006200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr14:69003000-69004800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr14:69003000-69005400	Weak transcription	Fetal Intestine Small	intestine
11	chr14:69003000-69006200	Weak transcription	HSMMtube	muscle
12	chr14:69003000-69006400	Weak transcription	HSMM	muscle
13	chr14:69003000-69007800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr14:69003000-69007800	Weak transcription	Hela-S3	cervix
15	chr14:69003000-69008000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr14:69003000-69009000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr14:69003200-69004800	Weak transcription	Fetal Muscle Leg	muscle
18	chr14:69003200-69005400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr14:69003200-69005800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr14:69003200-69006000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr14:69003200-69009000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr14:69003400-69004800	Weak transcription	Psoas Muscle	Psoas
23	chr14:69003400-69006000	Weak transcription	NHDF-Ad	bronchial
24	chr14:69003400-69006000	Weak transcription	NHLF	lung
25	chr14:69003600-69007800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr14:69003600-69008000	Weak transcription	HMEC	breast
27	chr14:69003600-69009000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr14:69003600-69009000	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links