Variant report

Variant	rs1859705
Chromosome Location	chr7:40671234-40671235
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1000013	0.81[ASN][1000 genomes]
rs1019018	0.84[ASN][1000 genomes]
rs10256576	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10263677	0.84[ASN][1000 genomes]
rs10429076	0.84[ASN][1000 genomes]
rs10486810	0.84[ASN][1000 genomes]
rs10486811	0.84[ASN][1000 genomes]
rs11973006	0.84[ASN][1000 genomes]
rs11974322	0.84[ASN][1000 genomes]
rs11977013	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11980464	0.84[ASN][1000 genomes]
rs11982075	0.81[ASN][1000 genomes]
rs17171727	0.81[ASN][1000 genomes]
rs17171730	0.81[ASN][1000 genomes]
rs17171747	0.84[ASN][1000 genomes]
rs17171749	0.93[ASN][1000 genomes]
rs17171750	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs17171753	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1859660	0.84[ASN][1000 genomes]
rs2329819	0.84[ASN][1000 genomes]
rs28657711	0.84[ASN][1000 genomes]
rs4720371	0.84[ASN][1000 genomes]
rs4723972	0.84[ASN][1000 genomes]
rs61107746	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6462985	0.81[ASN][1000 genomes]
rs67340458	0.84[ASN][1000 genomes]
rs6943787	0.81[ASN][1000 genomes]
rs6948724	0.84[ASN][1000 genomes]
rs6948900	0.84[ASN][1000 genomes]
rs6954401	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6956277	0.84[ASN][1000 genomes]
rs73122188	0.84[ASN][1000 genomes]
rs73308289	0.84[ASN][1000 genomes]
rs7459324	0.93[ASN][1000 genomes]
rs7808612	0.84[ASN][1000 genomes]
rs917204	0.84[ASN][1000 genomes]
rs9632613	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv887987	chr7:40505382-40748650	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830971	chr7:40523075-40700172	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1025605	chr7:40623026-40789063	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv538823	chr7:40623026-40789063	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1019833	chr7:40649369-40767377	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv538824	chr7:40649369-40767377	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40654600-40676400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:40668200-40679800	Weak transcription	Psoas Muscle	Psoas
3	chr7:40669200-40681400	Weak transcription	Aorta	Aorta

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