Variant report

Variant	rs10429076
Chromosome Location	chr7:40610604-40610605
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1000013	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1019018	1.00[ASN][1000 genomes]
rs10254954	0.86[AFR][1000 genomes]
rs10263677	1.00[ASN][1000 genomes]
rs10486810	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10486811	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11973006	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11974322	1.00[ASN][1000 genomes]
rs11977013	0.84[ASN][1000 genomes]
rs11980464	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11982075	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs17171727	0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs17171730	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17171747	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1859660	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1859705	0.84[ASN][1000 genomes]
rs2329819	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28657711	1.00[ASN][1000 genomes]
rs4720367	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4720371	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4723967	0.84[AFR][1000 genomes]
rs4723972	1.00[ASN][1000 genomes]
rs61094306	0.82[EUR][1000 genomes]
rs61107746	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6462985	0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs66582232	0.90[EUR][1000 genomes]
rs66743443	0.91[EUR][1000 genomes]
rs67156695	0.90[EUR][1000 genomes]
rs67309967	0.90[EUR][1000 genomes]
rs67340458	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68082095	0.89[EUR][1000 genomes]
rs6943787	0.97[ASN][1000 genomes]
rs6945570	0.86[AFR][1000 genomes]
rs6948724	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6948900	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6956277	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6962853	0.89[EUR][1000 genomes]
rs6977104	0.86[AFR][1000 genomes]
rs73122188	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73308289	1.00[ASN][1000 genomes]
rs7776976	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7808612	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs917204	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9632613	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1030515	chr7:40501867-40634808	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv887987	chr7:40505382-40748650	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv830971	chr7:40523075-40700172	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40607200-40611400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:40608800-40612000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr7:40609000-40611400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr7:40609000-40611400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:40609000-40611600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr7:40609000-40611800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:40609200-40612000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:40609600-40610800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr7:40609800-40612600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr7:40609800-40613800	Enhancers	HSMM	muscle
11	chr7:40610200-40611200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr7:40610200-40611200	Weak transcription	Osteobl	bone
13	chr7:40610200-40611600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr7:40610200-40612000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr7:40610400-40610800	Weak transcription	HSMMtube	muscle
16	chr7:40610400-40611200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr7:40610400-40611400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr7:40610400-40611400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr7:40610400-40611400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr7:40610400-40611400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr7:40610400-40611400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr7:40610400-40611400	Weak transcription	Aorta	Aorta
23	chr7:40610400-40611400	Weak transcription	Fetal Muscle Leg	muscle
24	chr7:40610600-40611000	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr7:40610600-40611000	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr7:40610600-40611000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr7:40610600-40611000	Weak transcription	Fetal Heart	heart

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