Variant report

Variant	rs6962853
Chromosome Location	chr7:40663909-40663910
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10429076	0.89[EUR][1000 genomes]
rs10486811	0.96[EUR][1000 genomes]
rs11973006	0.95[EUR][1000 genomes]
rs17171730	0.89[EUR][1000 genomes]
rs17171734	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17171747	0.97[EUR][1000 genomes]
rs34523428	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3919491	1.00[ASN][1000 genomes]
rs4720367	0.81[EUR][1000 genomes]
rs4720370	1.00[ASN][1000 genomes]
rs4723966	0.81[AFR][1000 genomes]
rs4723968	0.81[AFR][1000 genomes]
rs4723969	0.83[AFR][1000 genomes]
rs58275184	0.90[AFR][1000 genomes]
rs60011074	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60999211	1.00[ASN][1000 genomes]
rs61094306	0.81[EUR][1000 genomes]
rs61107746	0.95[EUR][1000 genomes]
rs66582232	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66743443	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67081175	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs67156695	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67309967	0.95[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67340458	0.91[EUR][1000 genomes]
rs68082095	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6948724	0.96[EUR][1000 genomes]
rs6948900	0.93[EUR][1000 genomes]
rs6956277	0.95[EUR][1000 genomes]
rs73122188	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73308254	0.81[AFR][1000 genomes]
rs73308257	0.86[AFR][1000 genomes]
rs73308260	0.83[AFR][1000 genomes]
rs73308264	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73308269	1.00[ASN][1000 genomes]
rs73308281	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73308284	1.00[ASN][1000 genomes]
rs73308291	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73308300	1.00[ASN][1000 genomes]
rs73310208	1.00[ASN][1000 genomes]
rs73310222	0.90[AFR][1000 genomes]
rs73310225	0.90[AFR][1000 genomes]
rs73310227	0.90[AFR][1000 genomes]
rs73310231	0.90[AFR][1000 genomes]
rs7776976	0.81[EUR][1000 genomes]
rs9632613	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv887987	chr7:40505382-40748650	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830971	chr7:40523075-40700172	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1025605	chr7:40623026-40789063	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv538823	chr7:40623026-40789063	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1019833	chr7:40649369-40767377	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv538824	chr7:40649369-40767377	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40646200-40668800	Weak transcription	Aorta	Aorta
2	chr7:40654600-40676400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr7:40661000-40665400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr7:40661600-40665200	Enhancers	Fetal Intestine Small	intestine
5	chr7:40661600-40665400	Enhancers	HepG2	liver
6	chr7:40662400-40665200	Enhancers	Fetal Intestine Large	intestine
7	chr7:40662600-40664800	Enhancers	Fetal Lung	lung
8	chr7:40662800-40664200	Weak transcription	Ovary	ovary
9	chr7:40663400-40664800	Enhancers	Duodenum Mucosa	Duodenum
10	chr7:40663600-40665000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr7:40663600-40665000	Enhancers	K562	blood
12	chr7:40663800-40664400	Weak transcription	Fetal Kidney	kidney

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