Variant report

Variant	rs61094306
Chromosome Location	chr7:40563784-40563785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:40561772..40563957-chr7:40570826..40573636,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10429076	0.82[EUR][1000 genomes]
rs10486811	0.83[EUR][1000 genomes]
rs11973006	0.82[EUR][1000 genomes]
rs17171730	0.89[EUR][1000 genomes]
rs17171747	0.83[EUR][1000 genomes]
rs2051919	0.89[EUR][1000 genomes]
rs4720367	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4720368	1.00[ASN][1000 genomes]
rs4723966	1.00[ASN][1000 genomes]
rs4723968	1.00[ASN][1000 genomes]
rs4723969	1.00[ASN][1000 genomes]
rs4723970	1.00[ASN][1000 genomes]
rs57268522	1.00[ASN][1000 genomes]
rs61107746	0.82[EUR][1000 genomes]
rs66582232	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs66743443	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67081175	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67156695	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67309967	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67340458	0.85[EUR][1000 genomes]
rs68082095	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6948724	0.83[EUR][1000 genomes]
rs6948900	0.83[EUR][1000 genomes]
rs6956277	0.82[EUR][1000 genomes]
rs6962853	0.81[EUR][1000 genomes]
rs73122188	0.83[EUR][1000 genomes]
rs73308254	1.00[ASN][1000 genomes]
rs73308257	1.00[ASN][1000 genomes]
rs73308260	1.00[ASN][1000 genomes]
rs73308263	1.00[ASN][1000 genomes]
rs7776976	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv887985	chr7:40265510-40586674	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv817404	chr7:40295934-40573605	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv830969	chr7:40422576-40582389	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1017615	chr7:40445480-40570791	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1030515	chr7:40501867-40634808	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv887987	chr7:40505382-40748650	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv830971	chr7:40523075-40700172	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40553000-40564400	Weak transcription	Aorta	Aorta
2	chr7:40557600-40568200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr7:40561000-40565400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:40562200-40577800	Weak transcription	HSMM	muscle

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