Variant report

Variant	rs73308260
Chromosome Location	chr7:40575795-40575796
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1000013	0.92[EUR][1000 genomes]
rs1019018	0.85[EUR][1000 genomes]
rs10254954	0.91[EUR][1000 genomes]
rs10263677	0.90[EUR][1000 genomes]
rs10486810	0.84[EUR][1000 genomes]
rs11974322	0.84[EUR][1000 genomes]
rs11980464	0.85[EUR][1000 genomes]
rs11982075	0.92[EUR][1000 genomes]
rs17171727	0.92[EUR][1000 genomes]
rs17171734	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1859660	0.85[EUR][1000 genomes]
rs2329818	0.90[EUR][1000 genomes]
rs2329819	0.84[EUR][1000 genomes]
rs28657711	0.86[EUR][1000 genomes]
rs34523428	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs3919491	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4720368	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4720370	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4720371	0.84[EUR][1000 genomes]
rs4723966	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4723967	0.91[EUR][1000 genomes]
rs4723968	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4723969	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4723970	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4723972	0.85[EUR][1000 genomes]
rs57268522	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58275184	0.83[AFR][1000 genomes]
rs60011074	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60999211	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61094306	1.00[ASN][1000 genomes]
rs6462985	0.92[EUR][1000 genomes]
rs66743443	0.93[AFR][1000 genomes]
rs67081175	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs67156695	0.84[AFR][1000 genomes]
rs67309967	0.88[AFR][1000 genomes]
rs68082095	0.83[AFR][1000 genomes]
rs6943787	0.94[EUR][1000 genomes]
rs6945570	0.91[EUR][1000 genomes]
rs6962853	0.83[AFR][1000 genomes]
rs6977104	0.91[EUR][1000 genomes]
rs73308254	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73308257	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73308263	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73308264	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73308269	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73308281	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73308284	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73308289	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73308291	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73308300	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73310208	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73310222	0.83[AFR][1000 genomes]
rs73310225	0.83[AFR][1000 genomes]
rs73310227	0.83[AFR][1000 genomes]
rs73310231	0.83[AFR][1000 genomes]
rs7808612	0.92[EUR][1000 genomes]
rs917204	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv887985	chr7:40265510-40586674	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830969	chr7:40422576-40582389	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1030515	chr7:40501867-40634808	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv887987	chr7:40505382-40748650	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv830971	chr7:40523075-40700172	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40562200-40577800	Weak transcription	HSMM	muscle
2	chr7:40567600-40584600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:40568000-40581200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:40572400-40580800	Weak transcription	NHDF-Ad	bronchial
5	chr7:40575200-40576600	Enhancers	Hela-S3	cervix
6	chr7:40575400-40576600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr7:40575600-40576200	Active TSS	Aorta	Aorta

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