Variant report

Variant	rs73310231
Chromosome Location	chr7:40679842-40679843
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:40679489..40681796-chr7:40691535..40693864,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10256576	0.89[EUR][1000 genomes]
rs17171734	0.85[AFR][1000 genomes]
rs17171749	0.92[EUR][1000 genomes]
rs17171750	0.92[EUR][1000 genomes]
rs17171753	0.86[EUR][1000 genomes]
rs34523428	0.95[AFR][1000 genomes]
rs4723966	0.81[AFR][1000 genomes]
rs4723968	0.81[AFR][1000 genomes]
rs4723969	0.83[AFR][1000 genomes]
rs58275184	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60011074	0.87[AFR][1000 genomes]
rs66743443	0.81[AFR][1000 genomes]
rs67156695	0.81[AFR][1000 genomes]
rs67309967	0.85[AFR][1000 genomes]
rs68082095	0.90[AFR][1000 genomes]
rs6954401	0.89[EUR][1000 genomes]
rs6962853	0.90[AFR][1000 genomes]
rs73308254	0.81[AFR][1000 genomes]
rs73308257	0.85[AFR][1000 genomes]
rs73308260	0.83[AFR][1000 genomes]
rs73308264	0.81[AFR][1000 genomes]
rs73308281	0.85[AFR][1000 genomes]
rs73308291	0.87[AFR][1000 genomes]
rs73310222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73310225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73310227	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73310238	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73310243	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73310244	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7459324	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv887987	chr7:40505382-40748650	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830971	chr7:40523075-40700172	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1025605	chr7:40623026-40789063	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv538823	chr7:40623026-40789063	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1019833	chr7:40649369-40767377	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv538824	chr7:40649369-40767377	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40669200-40681400	Weak transcription	Aorta	Aorta
2	chr7:40678600-40683800	Weak transcription	Fetal Heart	heart
3	chr7:40679000-40680000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:40679000-40680000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:40679600-40680600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:40679800-40681000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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