Variant report

Variant	rs73308257
Chromosome Location	chr7:40568368-40568369
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1000013	0.89[EUR][1000 genomes]
rs1019018	0.81[EUR][1000 genomes]
rs10254954	0.95[EUR][1000 genomes]
rs10263677	0.86[EUR][1000 genomes]
rs10486810	0.80[EUR][1000 genomes]
rs11974322	0.80[EUR][1000 genomes]
rs11980464	0.81[EUR][1000 genomes]
rs11982075	0.89[EUR][1000 genomes]
rs17171727	0.89[EUR][1000 genomes]
rs17171734	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1859660	0.81[EUR][1000 genomes]
rs2329818	0.86[EUR][1000 genomes]
rs2329819	0.80[EUR][1000 genomes]
rs28657711	0.83[EUR][1000 genomes]
rs34523428	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs3919491	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4720368	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4720370	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4720371	0.80[EUR][1000 genomes]
rs4723966	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4723967	0.95[EUR][1000 genomes]
rs4723968	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4723969	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4723970	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4723972	0.81[EUR][1000 genomes]
rs57268522	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58275184	0.85[AFR][1000 genomes]
rs60011074	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60999211	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61094306	1.00[ASN][1000 genomes]
rs6462985	0.89[EUR][1000 genomes]
rs66582232	0.84[AFR][1000 genomes]
rs66743443	0.86[AFR][1000 genomes]
rs67081175	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs67156695	0.86[AFR][1000 genomes]
rs67309967	0.90[AFR][1000 genomes]
rs68082095	0.86[AFR][1000 genomes]
rs6943787	0.90[EUR][1000 genomes]
rs6945570	0.95[EUR][1000 genomes]
rs6962853	0.86[AFR][1000 genomes]
rs6977104	0.95[EUR][1000 genomes]
rs73308254	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73308260	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73308263	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73308264	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73308269	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73308281	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73308284	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73308289	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73308291	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73308300	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73310208	0.86[EUR][1000 genomes]
rs73310222	0.85[AFR][1000 genomes]
rs73310225	0.85[AFR][1000 genomes]
rs73310227	0.85[AFR][1000 genomes]
rs73310231	0.85[AFR][1000 genomes]
rs7808612	0.89[EUR][1000 genomes]
rs917204	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv887985	chr7:40265510-40586674	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv817404	chr7:40295934-40573605	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv830969	chr7:40422576-40582389	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1017615	chr7:40445480-40570791	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1030515	chr7:40501867-40634808	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv887987	chr7:40505382-40748650	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv830971	chr7:40523075-40700172	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40562200-40577800	Weak transcription	HSMM	muscle
2	chr7:40567200-40575000	Weak transcription	Aorta	Aorta
3	chr7:40567600-40584600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr7:40567800-40569400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:40568000-40570000	Weak transcription	NHDF-Ad	bronchial
6	chr7:40568000-40570200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr7:40568000-40581200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:40568200-40568400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood

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