Variant report

Variant	rs66743443
Chromosome Location	chr7:40599927-40599928
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10429076	0.91[EUR][1000 genomes]
rs10486811	0.89[EUR][1000 genomes]
rs11973006	0.90[EUR][1000 genomes]
rs17171730	0.94[EUR][1000 genomes]
rs17171734	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17171747	0.90[EUR][1000 genomes]
rs34523428	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3919491	1.00[ASN][1000 genomes]
rs4720367	0.84[EUR][1000 genomes]
rs4720368	0.88[AFR][1000 genomes]
rs4720370	1.00[ASN][1000 genomes]
rs4723966	0.91[AFR][1000 genomes]
rs4723968	0.82[AFR][1000 genomes]
rs4723969	0.93[AFR][1000 genomes]
rs4723970	0.81[AFR][1000 genomes]
rs57268522	0.86[AFR][1000 genomes]
rs58275184	0.81[AFR][1000 genomes]
rs60011074	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60999211	1.00[ASN][1000 genomes]
rs61094306	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61107746	0.88[EUR][1000 genomes]
rs66582232	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67081175	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67156695	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67309967	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67340458	0.95[EUR][1000 genomes]
rs68082095	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6948724	0.89[EUR][1000 genomes]
rs6948900	0.92[EUR][1000 genomes]
rs6956277	0.90[EUR][1000 genomes]
rs6962853	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73122188	0.90[EUR][1000 genomes]
rs73308254	0.82[AFR][1000 genomes]
rs73308257	0.86[AFR][1000 genomes]
rs73308260	0.93[AFR][1000 genomes]
rs73308264	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73308269	1.00[ASN][1000 genomes]
rs73308281	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73308284	1.00[ASN][1000 genomes]
rs73308291	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73308300	1.00[ASN][1000 genomes]
rs73310208	1.00[ASN][1000 genomes]
rs73310222	0.81[AFR][1000 genomes]
rs73310225	0.81[AFR][1000 genomes]
rs73310227	0.81[AFR][1000 genomes]
rs73310231	0.81[AFR][1000 genomes]
rs7776976	0.84[EUR][1000 genomes]
rs9632613	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1030515	chr7:40501867-40634808	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv887987	chr7:40505382-40748650	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv830971	chr7:40523075-40700172	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40596000-40608400	Weak transcription	Aorta	Aorta
2	chr7:40599800-40604800	Weak transcription	Fetal Heart	heart

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