Variant report

Variant	rs7776976
Chromosome Location	chr7:40572879-40572880
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:40561772..40563957-chr7:40570826..40573636,2	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1000013	0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs10254954	0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10278801	1.00[JPT][hapmap]
rs10429076	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10486810	0.85[YRI][hapmap];0.83[AFR][1000 genomes]
rs10486811	0.92[CEU][hapmap];0.86[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11973006	0.92[CEU][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11977013	0.92[CEU][hapmap]
rs11980464	0.87[YRI][hapmap];0.86[AFR][1000 genomes]
rs11982075	0.93[YRI][hapmap];0.89[AFR][1000 genomes]
rs12534250	1.00[JPT][hapmap]
rs12666860	1.00[JPT][hapmap]
rs1304795	1.00[JPT][hapmap]
rs16880235	1.00[JPT][hapmap]
rs16880239	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17171713	1.00[JPT][hapmap]
rs17171727	0.93[YRI][hapmap];0.89[AFR][1000 genomes]
rs17171730	0.92[CEU][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17171733	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17171747	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs17171751	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17171752	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1859660	0.87[AFR][1000 genomes]
rs2024014	1.00[JPT][hapmap]
rs2051919	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs2108189	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2329776	1.00[JPT][hapmap]
rs2329819	0.85[YRI][hapmap];0.83[AFR][1000 genomes]
rs3779136	1.00[JPT][hapmap]
rs4720367	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4720371	1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes]
rs4723967	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4723972	1.00[CHB][hapmap]
rs61094306	0.99[EUR][1000 genomes]
rs61107746	0.83[EUR][1000 genomes]
rs6462985	0.93[YRI][hapmap];0.89[AFR][1000 genomes]
rs66582232	0.82[EUR][1000 genomes]
rs66743443	0.84[EUR][1000 genomes]
rs67081175	0.96[EUR][1000 genomes]
rs67156695	0.86[EUR][1000 genomes]
rs67309967	0.86[EUR][1000 genomes]
rs67340458	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs68082095	0.81[EUR][1000 genomes]
rs6945570	0.95[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6947887	1.00[JPT][hapmap]
rs6948724	0.92[CEU][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6948900	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6956277	0.92[CEU][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6957636	1.00[JPT][hapmap]
rs6962853	0.81[EUR][1000 genomes]
rs6965918	1.00[JPT][hapmap]
rs6977104	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73122188	0.83[EUR][1000 genomes]
rs7784279	1.00[JPT][hapmap]
rs7789681	1.00[JPT][hapmap]
rs7808612	0.93[YRI][hapmap];0.88[AFR][1000 genomes]
rs7809620	1.00[JPT][hapmap]
rs917204	0.84[AFR][1000 genomes]
rs9632613	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv887985	chr7:40265510-40586674	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv817404	chr7:40295934-40573605	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv830969	chr7:40422576-40582389	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1030515	chr7:40501867-40634808	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv887987	chr7:40505382-40748650	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv830971	chr7:40523075-40700172	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40562200-40577800	Weak transcription	HSMM	muscle
2	chr7:40567200-40575000	Weak transcription	Aorta	Aorta
3	chr7:40567600-40584600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr7:40568000-40581200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:40572400-40580800	Weak transcription	NHDF-Ad	bronchial

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