Variant report

Variant	rs1859845
Chromosome Location	chr7:40900442-40900443
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10226883	0.98[EUR][1000 genomes]
rs10227436	0.98[EUR][1000 genomes]
rs10255986	0.95[CHB][hapmap];0.84[CHD][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs10263468	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10263609	0.97[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs10263717	0.97[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs10266350	0.84[ASN][1000 genomes]
rs10268023	0.90[ASN][1000 genomes]
rs1029623	0.98[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs1029624	0.99[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs1053953	0.99[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1203578	1.00[CEU][hapmap];0.89[GIH][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes]
rs17688697	1.00[CEU][hapmap];0.81[YRI][hapmap];0.97[EUR][1000 genomes]
rs17688924	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1921755	0.88[CEU][hapmap];0.97[EUR][1000 genomes]
rs2010706	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2108377	0.97[EUR][1000 genomes]
rs28583134	0.89[ASN][1000 genomes]
rs3801239	0.95[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs4050954	0.98[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs4050966	0.98[EUR][1000 genomes]
rs4085300	0.95[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs4723983	1.00[CEU][hapmap];0.89[GIH][hapmap];0.84[LWK][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs6952729	0.90[ASN][1000 genomes]
rs6971120	0.93[ASW][hapmap];1.00[CEU][hapmap];0.89[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs699484	0.93[ASW][hapmap];1.00[CEU][hapmap];0.89[GIH][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs7777500	0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs7809237	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830972	chr7:40814709-40945917	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3448830	chr7:40900281-40900553	Weak transcription Genic enhancers Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40880200-40905400	Weak transcription	HSMMtube	muscle
2	chr7:40890000-40919400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:40890200-40906200	Weak transcription	Osteobl	bone
4	chr7:40898600-40901200	Genic enhancers	HMEC	breast
5	chr7:40898800-40901200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:40898800-40901200	Enhancers	NHEK	skin
7	chr7:40899200-40901400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:40899600-40901200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:40900000-40908800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr7:40900200-40905200	Weak transcription	Aorta	Aorta

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