Variant report

Variant	rs7777500
Chromosome Location	chr7:40880200-40880201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10231596	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs10237052	0.99[EUR][1000 genomes]
rs10246441	0.85[EUR][1000 genomes]
rs10255986	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10266350	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10268023	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12019351	0.84[CEU][hapmap];0.87[EUR][1000 genomes]
rs12538907	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs12538933	0.87[EUR][1000 genomes]
rs12538949	0.84[CEU][hapmap];0.87[EUR][1000 genomes]
rs12538965	0.84[CEU][hapmap];0.87[EUR][1000 genomes]
rs17688924	0.85[ASN][1000 genomes]
rs17714442	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1859845	0.84[ASN][1000 genomes]
rs1921753	0.99[EUR][1000 genomes]
rs1921754	0.99[EUR][1000 genomes]
rs1921756	0.86[EUR][1000 genomes]
rs1921757	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs2005766	0.99[EUR][1000 genomes]
rs28583134	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28621645	0.99[EUR][1000 genomes]
rs2876979	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs3801239	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4085300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4265100	0.99[EUR][1000 genomes]
rs4425648	0.99[EUR][1000 genomes]
rs4720378	0.99[EUR][1000 genomes]
rs4720379	0.99[EUR][1000 genomes]
rs4720380	0.99[EUR][1000 genomes]
rs4720381	0.98[EUR][1000 genomes]
rs4723982	0.99[EUR][1000 genomes]
rs67369140	0.88[EUR][1000 genomes]
rs6952729	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6952818	0.98[EUR][1000 genomes]
rs6952995	0.98[EUR][1000 genomes]
rs6957123	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs6963162	0.99[EUR][1000 genomes]
rs6970936	0.86[EUR][1000 genomes]
rs732890	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs758010	0.99[EUR][1000 genomes]
rs7808121	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs7808304	0.99[EUR][1000 genomes]
rs7808678	0.99[EUR][1000 genomes]
rs7809981	0.83[EUR][1000 genomes]
rs9639838	1.00[CEU][hapmap];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830972	chr7:40814709-40945917	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1827128	chr7:40862370-40886576	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40867600-40882600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr7:40874000-40883400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:40879400-40880200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:40879400-40880200	ZNF genes & repeats	HSMMtube	muscle
5	chr7:40879400-40880200	ZNF genes & repeats	NHEK	skin
6	chr7:40879400-40880400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:40879400-40880400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:40879400-40880400	ZNF genes & repeats	HMEC	breast
9	chr7:40880000-40881600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:40880000-40883200	Weak transcription	NH-A	brain
11	chr7:40880000-40883200	Weak transcription	Osteobl	bone
12	chr7:40880200-40881200	Weak transcription	NHEK	skin
13	chr7:40880200-40905400	Weak transcription	HSMMtube	muscle

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