Variant report

Variant	rs2005766
Chromosome Location	chr7:40882876-40882877
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10226883	0.82[ASN][1000 genomes]
rs10227436	0.82[ASN][1000 genomes]
rs10231596	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10237052	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10246441	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10255986	0.96[EUR][1000 genomes]
rs10266350	0.99[EUR][1000 genomes]
rs10268023	0.96[EUR][1000 genomes]
rs12019351	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12538907	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12538933	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12538949	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12538965	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17688697	0.82[ASN][1000 genomes]
rs17714442	0.98[EUR][1000 genomes]
rs1921753	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1921754	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1921755	0.82[ASN][1000 genomes]
rs1921756	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1921757	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2108377	0.82[ASN][1000 genomes]
rs28583134	0.95[EUR][1000 genomes]
rs28621645	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2876979	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3801239	0.99[EUR][1000 genomes]
rs4050966	0.82[ASN][1000 genomes]
rs4085300	0.99[EUR][1000 genomes]
rs4265100	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4425648	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4720378	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4720379	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4720380	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4720381	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4723982	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4723983	0.82[ASN][1000 genomes]
rs67369140	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6952729	0.97[EUR][1000 genomes]
rs6952818	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6952995	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6957123	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6963162	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6970936	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs732890	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs758010	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7777500	0.99[EUR][1000 genomes]
rs7808121	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7808304	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7808678	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7809981	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9639838	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830972	chr7:40814709-40945917	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1827128	chr7:40862370-40886576	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40874000-40883400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr7:40880000-40883200	Weak transcription	NH-A	brain
3	chr7:40880000-40883200	Weak transcription	Osteobl	bone
4	chr7:40880200-40905400	Weak transcription	HSMMtube	muscle
5	chr7:40880400-40889600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:40881800-40883200	Enhancers	NHEK	skin
7	chr7:40882200-40883200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:40882200-40883200	Enhancers	HMEC	breast
9	chr7:40882200-40884400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:40882200-40885200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr7:40882600-40883200	Weak transcription	Aorta	Aorta
12	chr7:40882600-40884000	Enhancers	Fetal Thymus	thymus
13	chr7:40882600-40884400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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