Variant report

Variant rs1862639
Chromosome Location chr5:52307370-52307371
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:31 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:52286200-52313600 Weak transcription Lung lung
2 chr5:52289200-52311600 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr5:52293800-52313400 Weak transcription Fetal Intestine Small intestine
4 chr5:52299400-52313400 Weak transcription Esophagus oesophagus
5 chr5:52302600-52308000 Genic enhancers Breast Myoepithelial Primary Cells Breast
6 chr5:52303000-52307400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
7 chr5:52303400-52320400 Weak transcription Fetal Brain Male brain
8 chr5:52304800-52307400 Enhancers HMEC breast
9 chr5:52304800-52307800 Enhancers HepG2 liver
10 chr5:52305000-52313400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
11 chr5:52305000-52314600 Weak transcription HUVEC blood vessel
12 chr5:52305200-52311600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
13 chr5:52305200-52317200 Weak transcription A549 lung
14 chr5:52305400-52313000 Weak transcription NH-A brain
15 chr5:52305800-52307400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr5:52305800-52307400 Enhancers Brain Hippocampus Middle brain
17 chr5:52305800-52307800 Enhancers Brain Cingulate Gyrus brain
18 chr5:52305800-52311600 Weak transcription Brain Substantia Nigra brain
19 chr5:52306000-52310000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
20 chr5:52306600-52307400 Enhancers NHDF-Ad bronchial
21 chr5:52306800-52307400 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
22 chr5:52306800-52307800 Enhancers NHLF lung
23 chr5:52306800-52310800 Weak transcription Hela-S3 cervix
24 chr5:52306800-52312200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
25 chr5:52306800-52313000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
26 chr5:52307000-52307400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
27 chr5:52307000-52307800 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
28 chr5:52307000-52307800 Strong transcription NHEK skin
29 chr5:52307000-52333800 Weak transcription Gastric stomach
30 chr5:52307200-52307400 Enhancers Brain Inferior Temporal Lobe brain
31 chr5:52307200-52308000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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