Variant report

Variant rs67217308
Chromosome Location chr5:52313828-52313829
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:36 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:52303400-52320400 Weak transcription Fetal Brain Male brain
2 chr5:52305000-52314600 Weak transcription HUVEC blood vessel
3 chr5:52305200-52317200 Weak transcription A549 lung
4 chr5:52307000-52333800 Weak transcription Gastric stomach
5 chr5:52310800-52315000 Enhancers Hela-S3 cervix
6 chr5:52311000-52314200 Enhancers Brain Hippocampus Middle brain
7 chr5:52311400-52314000 Genic enhancers Breast Myoepithelial Primary Cells Breast
8 chr5:52311600-52314200 Enhancers Brain Substantia Nigra brain
9 chr5:52311800-52317200 Weak transcription NHLF lung
10 chr5:52312000-52314000 Enhancers Brain Inferior Temporal Lobe brain
11 chr5:52312000-52318400 Weak transcription Sigmoid Colon Sigmoid Colon
12 chr5:52312800-52314400 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
13 chr5:52312800-52315600 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
14 chr5:52313000-52314200 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
15 chr5:52313200-52315800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
16 chr5:52313400-52314000 Genic enhancers Esophagus oesophagus
17 chr5:52313400-52314400 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
18 chr5:52313400-52314400 Strong transcription Fetal Intestine Small intestine
19 chr5:52313400-52315800 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
20 chr5:52313400-52319400 Weak transcription Muscle Satellite Cultured Cells --
21 chr5:52313600-52314000 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin02 Skin
22 chr5:52313600-52314200 Active TSS H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
23 chr5:52313600-52314200 Enhancers Lung lung
24 chr5:52313600-52314200 Genic enhancers HepG2 liver
25 chr5:52313600-52314400 ZNF genes & repeats iPS DF 19.11 Cell Line embryonic stem cell
26 chr5:52313600-52314600 Weak transcription Right Ventricle heart
27 chr5:52313600-52318400 Weak transcription NHDF-Ad bronchial
28 chr5:52313600-52319800 Weak transcription NH-A brain
29 chr5:52313600-52321000 Weak transcription Cortex derived primary cultured neurospheres brain
30 chr5:52313800-52314400 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
31 chr5:52313800-52314400 Enhancers HMEC breast
32 chr5:52313800-52314400 Strong transcription NHEK skin
33 chr5:52313800-52318800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr5:52313800-52319800 Weak transcription Brain Angular Gyrus brain
35 chr5:52313800-52320400 Weak transcription Brain Anterior Caudate brain
36 chr5:52313800-52323400 Weak transcription Spleen Spleen

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