Variant report

Variant	rs1862821
Chromosome Location	chr16:82207996-82207997
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82207842..82210813-chr16:82220344..82222897,2	MCF-7	breast:

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10514531	0.84[CEU][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10514533	0.82[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10514534	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1056629	0.82[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1056654	0.81[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1056690	0.82[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11150443	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs11150444	0.81[EUR][1000 genomes]
rs11150445	0.81[EUR][1000 genomes]
rs11641082	0.86[EUR][1000 genomes]
rs11641178	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11642247	0.83[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11642251	0.91[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11643324	0.82[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11643724	0.83[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11644183	0.81[EUR][1000 genomes]
rs11645618	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11646480	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs11647519	0.81[EUR][1000 genomes]
rs11647563	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs11647691	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs11647928	0.81[EUR][1000 genomes]
rs11649427	0.82[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12444846	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs12445764	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs12446030	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12446104	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12447225	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs12447597	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs12447673	0.86[EUR][1000 genomes]
rs12447876	0.86[EUR][1000 genomes]
rs12447913	0.86[EUR][1000 genomes]
rs12448665	0.81[EUR][1000 genomes]
rs12448672	0.82[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12448785	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13330853	0.82[CEU][hapmap]
rs1424153	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16956483	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs16956524	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16956527	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16956533	0.83[AMR][1000 genomes]
rs16956550	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16956555	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16956556	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs16956565	0.84[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16956572	0.84[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16956576	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs17804513	0.81[EUR][1000 genomes]
rs17804602	0.81[EUR][1000 genomes]
rs2081256	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs2081257	0.82[CEU][hapmap]
rs2081258	0.81[EUR][1000 genomes]
rs2098749	0.82[CEU][hapmap]
rs2098750	0.84[CEU][hapmap]
rs2303268	0.82[CEU][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2911428	0.82[CEU][hapmap];0.92[EUR][1000 genomes]
rs34652971	0.89[EUR][1000 genomes]
rs3751863	0.83[AMR][1000 genomes]
rs3751865	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3794705	0.83[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3829542	0.82[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3829552	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4243231	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4530129	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs4569272	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4888206	0.81[EUR][1000 genomes]
rs4888207	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4889475	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4889478	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4889480	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61702998	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7186965	0.84[CEU][hapmap]
rs72487977	0.86[EUR][1000 genomes]
rs7405214	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9635584	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9635585	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	nsv457579	chr16:82150293-82216622	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv573368	chr16:82150293-82216622	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv525467	chr16:82154619-82223485	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv1061064	chr16:82165314-82213799	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv1056381	chr16:82165314-82215388	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv1062687	chr16:82165516-82213799	Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv518129	chr16:82188173-82228076	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv833302	chr16:82188351-82363863	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	esv1844598	chr16:82195234-82429790	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
13	esv1847414	chr16:82195234-82429790	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
14	nsv532600	chr16:82197554-82314289	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
15	nsv907015	chr16:82203758-82284056	Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

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Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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