Variant report

Variant	rs1863429
Chromosome Location	chr15:52126919-52126920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:52124634..52127289-chr15:52149355..52151056,2	MCF-7	breast:
2	chr15:52125136..52127267-chr15:52135492..52137903,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1972419	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1991267	0.86[AMR][1000 genomes]
rs2016057	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2124587	0.81[AMR][1000 genomes]
rs2448810	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2448945	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2554354	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2554355	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2554358	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2570230	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2570243	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2570265	0.81[AMR][1000 genomes]
rs2593169	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2593181	0.84[AMR][1000 genomes]
rs2593184	0.88[AMR][1000 genomes]
rs2606133	0.81[AMR][1000 genomes]
rs2606147	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2623245	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2623247	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2623251	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2623258	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2623263	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2623270	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2623280	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2623291	0.81[AMR][1000 genomes]
rs2652595	0.81[AMR][1000 genomes]
rs2652597	0.81[AMR][1000 genomes]
rs691738	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52122800-52129800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:52123000-52129800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr15:52123000-52129800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr15:52123000-52130000	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr15:52123000-52134000	Weak transcription	Pancreas	Pancrea
6	chr15:52123200-52127000	Weak transcription	Brain Germinal Matrix	brain
7	chr15:52123200-52128200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr15:52123200-52129600	Weak transcription	Brain Angular Gyrus	brain
9	chr15:52123200-52129600	Weak transcription	Brain Substantia Nigra	brain
10	chr15:52123200-52129800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr15:52123200-52129800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr15:52123200-52129800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr15:52123200-52129800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr15:52123200-52129800	Weak transcription	Right Ventricle	heart
15	chr15:52123400-52127000	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr15:52123400-52129000	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr15:52123400-52129200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr15:52123400-52129600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr15:52123400-52129600	Weak transcription	Fetal Muscle Leg	muscle
20	chr15:52123400-52133600	Weak transcription	Colonic Mucosa	Colon
21	chr15:52123600-52127000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr15:52123600-52128200	Enhancers	HepG2	liver
23	chr15:52123600-52128400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr15:52123600-52129600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr15:52123600-52140000	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr15:52123800-52127000	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr15:52123800-52127000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr15:52123800-52127000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr15:52123800-52127200	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr15:52123800-52127600	Weak transcription	Osteobl	bone
31	chr15:52123800-52129400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:52123800-52129600	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr15:52123800-52129800	Weak transcription	Stomach Smooth Muscle	stomach
34	chr15:52123800-52130000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr15:52124000-52127200	Weak transcription	Fetal Heart	heart
36	chr15:52124000-52128800	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr15:52124000-52129000	Weak transcription	Brain Anterior Caudate	brain
38	chr15:52124000-52129800	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr15:52124200-52127600	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr15:52124200-52128200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
41	chr15:52124200-52129000	Weak transcription	Primary hematopoietic stem cells	blood
42	chr15:52124200-52129600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr15:52124200-52129600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr15:52124200-52129600	Weak transcription	Fetal Stomach	stomach
45	chr15:52124200-52129800	Weak transcription	Brain Hippocampus Middle	brain
46	chr15:52124200-52129800	Weak transcription	Fetal Intestine Large	intestine
47	chr15:52124200-52129800	Weak transcription	Fetal Intestine Small	intestine
48	chr15:52124200-52129800	Weak transcription	Psoas Muscle	Psoas
49	chr15:52124200-52132200	Weak transcription	Fetal Brain Male	brain
50	chr15:52124200-52134600	Weak transcription	HSMM	muscle

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