Variant report

Variant	rs186410745
Chromosome Location	chr14:21731711-21731712
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:21728426-21734336	GM12891	blood:	n/a	n/a
2	STAT5A	chr14:21731708-21733230	GM12878	blood:	n/a	chr14:21732454-21732463 chr14:21732453-21732462 chr14:21731920-21731932
3	POLR2A	chr14:21728614-21735024	GM12878	blood:	n/a	n/a
4	POLR2A	chr14:21731418-21732316	PFSK-1	brain:	n/a	n/a
5	RUNX3	chr14:21731386-21731738	GM12878	blood:	n/a	chr14:21731605-21731614 chr14:21731605-21731614 chr14:21731596-21731613
6	POLR2A	chr14:21731482-21732593	GM12891	blood:	n/a	n/a
7	MXI1	chr14:21731595-21732787	GM12878	blood:	n/a	n/a
8	POLR2A	chr14:21731506-21732242	H1-hESC	embryonic stem cell:	n/a	n/a
9	POLR2A	chr14:21731403-21733378	GM12892	blood:	n/a	n/a
10	POLR2A	chr14:21728611-21734968	GM12878	blood:	n/a	n/a
11	POLR2A	chr14:21731492-21732422	PANC-1	pancreas:	n/a	n/a
12	RUNX3	chr14:21731366-21731812	GM12878	blood:	n/a	chr14:21731605-21731614 chr14:21731605-21731614 chr14:21731596-21731613
13	POLR2A	chr14:21731474-21733227	IMR90	lung:	n/a	n/a
14	MYC	chr14:21731534-21731755	NB4	blood:	n/a	n/a
15	IKZF1	chr14:21731468-21732025	GM12878	blood:	n/a	n/a
16	POLR2A	chr14:21731625-21732545	H1-hESC	embryonic stem cell:	n/a	n/a
17	POLR2A	chr14:21731611-21731735	H1-hESC	embryonic stem cell:	n/a	n/a
18	POLR2A	chr14:21731499-21733364	SK-N-MC	brain:	n/a	n/a
19	ATF2	chr14:21731544-21732278	H1-hESC	embryonic stem cell:	n/a	n/a
20	POLR2A	chr14:21731395-21732632	GM12891	blood:	n/a	n/a
21	POLR2A	chr14:21731447-21732543	Hela-S3	cervix:	n/a	n/a
22	SIN3A	chr14:21731627-21731747	GM12878	blood:	n/a	n/a
23	POLR2A	chr14:21728514-21734782	HepG2	liver:	n/a	n/a
24	CHD1	chr14:21730830-21732887	GM12878	blood:	n/a	n/a
25	CHD1	chr14:21731403-21732196	H1-hESC	embryonic stem cell:	n/a	n/a
26	POLR2A	chr14:21731435-21733211	HepG2	liver:	n/a	n/a
27	CTCF	chr14:21731580-21731730	HVMF	connective:	n/a	n/a
28	POLR2A	chr14:21728424-21734236	HepG2	liver:	n/a	n/a
29	POLR2A	chr14:21731378-21738564	GM12878	blood:	n/a	n/a
30	POLR2A	chr14:21731441-21732617	K562	blood:	n/a	n/a
31	POLR2A	chr14:21728578-21737722	K562	blood:	n/a	n/a
32	NFYA	chr14:21731596-21731780	GM12878	blood:	n/a	n/a
33	HEY1	chr14:21731491-21732571	HepG2	liver:	n/a	n/a
34	POLR2A	chr14:21731417-21732579	GM12892	blood:	n/a	n/a
35	JUND	chr14:21731389-21733205	SK-N-SH	brain:	n/a	chr14:21732007-21732018 chr14:21732454-21732461 chr14:21732452-21732463 chr14:21732454-21732463 chr14:21732453-21732463 chr14:21732009-21732021 chr14:21732454-21732462 chr14:21732453-21732462
36	MAFF	chr14:21731500-21731726	K562	blood:	n/a	n/a
37	POLR2A	chr14:21731438-21732574	GM12892	blood:	n/a	n/a
38	BCLAF1	chr14:21731491-21731826	GM12878	blood:	n/a	n/a
39	POLR2A	chr14:21731492-21733388	GM12891	blood:	n/a	n/a
40	MAFK	chr14:21731400-21731728	HepG2	liver:	n/a	n/a
41	POLR2A	chr14:21731404-21735357	GM12878	blood:	n/a	n/a
42	POLR2A	chr14:21731507-21734631	A549	lung:	n/a	n/a
43	POLR2A	chr14:21731402-21734421	H1-hESC	embryonic stem cell:	n/a	n/a
44	POLR2A	chr14:21731441-21734438	Hela-S3	cervix:	n/a	n/a
45	TBL1XR1	chr14:21731706-21731896	K562	blood:	n/a	n/a
46	POLR2A	chr14:21731510-21732256	H1-hESC	embryonic stem cell:	n/a	n/a
47	POLR2A	chr14:21731555-21738535	GM18505	blood:	n/a	n/a
48	POLR2A	chr14:21728279-21734371	HepG2	liver:	n/a	n/a
49	POLR2A	chr14:21731410-21732610	GM12891	blood:	n/a	n/a
50	NFYB	chr14:21731568-21731759	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:21729912..21732388-chr14:21794121..21797950,3	K562	blood:
2	chr14:21730988..21732970-chr14:21824045..21825778,2	K562	blood:
3	chr14:21731325..21733922-chr14:21791322..21794128,2	MCF-7	breast:
4	chr14:21731095..21732813-chr14:21767081..21768936,2	K562	blood:
5	chr14:21731127..21734828-chr14:21850549..21852828,3	K562	blood:
6	chr14:21730203..21732388-chr14:21795365..21797950,2	K562	blood:
7	chr14:21731613..21734582-chr14:21826282..21828114,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SUPT16H-3	chr14:21731470-21731988	NONHSAT035669
2	lnc-SUPT16H-3	chr14:21731152-21731988	NONHSAT035670

Variant related genes	Relation type
HNRNPC	TF binding region
ENSG00000260830	Chromatin interaction
ENSG00000092200	Chromatin interaction
ENSG00000092201	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530009	chr14:21377022-22044608	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
2	nsv530769	chr14:21407536-22139126	Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
3	nsv916319	chr14:21507092-21896590	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv1036762	chr14:21507093-22101805	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
5	nsv541976	chr14:21507093-22101805	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
6	nsv530770	chr14:21526410-21852363	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
7	nsv1043570	chr14:21575068-21899964	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
8	nsv541977	chr14:21575068-21899964	Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
9	nsv1048032	chr14:21602341-21847247	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
10	nsv541978	chr14:21602341-21847247	Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
11	nsv948957	chr14:21616875-21928338	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
12	nsv901477	chr14:21625262-21750308	Genic enhancers Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
13	nsv901478	chr14:21626497-21750308	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
14	nsv1044822	chr14:21659344-21860081	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
15	nsv541979	chr14:21672540-21735893	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
16	nsv541980	chr14:21672540-21742729	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
17	nsv541982	chr14:21676221-21735893	Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
18	nsv541983	chr14:21676221-21742729	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
19	esv1825348	chr14:21691941-21829404	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
20	nsv1051407	chr14:21692670-21907366	Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
21	nsv541984	chr14:21692670-21907366	Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
22	nsv530010	chr14:21692670-21923767	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
23	nsv541986	chr14:21692703-21735893	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
24	nsv541987	chr14:21692703-21742729	Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
25	nsv541988	chr14:21696056-21735893	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
26	nsv541989	chr14:21696056-21742729	Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
27	esv3357025	chr14:21702262-21737534	Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
28	nsv541990	chr14:21702771-21757737	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
29	nsv428617	chr14:21721165-21871164	Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
30	nsv983804	chr14:21730434-21759672	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:21671200-21732000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr14:21702200-21735600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr14:21710400-21732000	Strong transcription	Fetal Intestine Large	intestine
4	chr14:21720400-21733600	Genic enhancers	Primary T cells fromperipheralblood	blood
5	chr14:21720600-21732000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:21723400-21731800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr14:21723800-21733000	Strong transcription	Fetal Muscle Leg	muscle
8	chr14:21723800-21734200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr14:21724000-21733800	Strong transcription	Fetal Stomach	stomach
10	chr14:21724200-21735600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr14:21726000-21733000	Strong transcription	Fetal Muscle Trunk	muscle
12	chr14:21726200-21731800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr14:21726200-21733600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
14	chr14:21726800-21733400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr14:21727000-21731800	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr14:21727400-21731800	Strong transcription	Fetal Thymus	thymus
17	chr14:21727400-21732000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
18	chr14:21727600-21731800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr14:21727800-21731800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr14:21727800-21731800	Weak transcription	Stomach Mucosa	stomach
21	chr14:21728600-21737400	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
22	chr14:21728800-21733800	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr14:21729000-21731800	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr14:21729200-21731800	Genic enhancers	Muscle Satellite Cultured Cells	--
25	chr14:21729200-21731800	Genic enhancers	Adipose Nuclei	Adipose
26	chr14:21729200-21731800	Genic enhancers	HUVEC	blood vessel
27	chr14:21729200-21731800	Genic enhancers	Osteobl	bone
28	chr14:21729200-21733200	Genic enhancers	Skeletal Muscle Male	skeletal muscle
29	chr14:21729200-21735600	Genic enhancers	Primary B cells from peripheral blood	blood
30	chr14:21729200-21736800	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
31	chr14:21729400-21731800	Weak transcription	Spleen	Spleen
32	chr14:21729600-21732800	Genic enhancers	Brain Germinal Matrix	brain
33	chr14:21729600-21733800	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr14:21729600-21734200	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr14:21729600-21734800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr14:21729800-21733600	Genic enhancers	Fetal Brain Female	brain
37	chr14:21729800-21735400	Transcr. at gene 5' and 3'	Breast Myoepithelial Primary Cells	Breast
38	chr14:21730000-21731800	Genic enhancers	Duodenum Mucosa	Duodenum
39	chr14:21730000-21731800	Enhancers	Pancreatic Islets	Pancreatic Islet
40	chr14:21730000-21731800	Genic enhancers	NHDF-Ad	bronchial
41	chr14:21730000-21732800	Genic enhancers	HUES48 Cell Line	embryonic stem cell
42	chr14:21730000-21733600	Genic enhancers	Liver	Liver
43	chr14:21730000-21733600	Genic enhancers	Rectal Mucosa Donor 29	rectum
44	chr14:21730000-21733800	Genic enhancers	Brain Hippocampus Middle	brain
45	chr14:21730000-21734000	Genic enhancers	Brain Cingulate Gyrus	brain
46	chr14:21730000-21734000	Strong transcription	Placenta Amnion	Placenta Amnion
47	chr14:21730000-21734200	Genic enhancers	Brain Inferior Temporal Lobe	brain
48	chr14:21730000-21734200	Genic enhancers	Rectal Mucosa Donor 31	rectum
49	chr14:21730200-21737600	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
50	chr14:21730400-21735000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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