Variant report

Variant	rs1865712
Chromosome Location	chr3:24474353-24474354
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2196430	0.88[EUR][1000 genomes]
rs2217884	0.95[ASN][1000 genomes]
rs4423711	0.91[CEU][hapmap]
rs4541352	0.95[CEU][hapmap];0.88[GIH][hapmap]
rs59212267	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60325252	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6550865	0.80[CEU][hapmap]
rs73032363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73032373	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73041705	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73041706	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7611219	0.84[CEU][hapmap]
rs7648757	0.91[CEU][hapmap];0.88[GIH][hapmap]
rs9854304	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24443800-24475800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:24446000-24476800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:24458800-24490200	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:24460800-24476600	Weak transcription	Left Ventricle	heart
5	chr3:24464800-24475400	Weak transcription	Aorta	Aorta
6	chr3:24466200-24474600	Weak transcription	Fetal Intestine Small	intestine
7	chr3:24470000-24474600	Weak transcription	HepG2	liver
8	chr3:24470000-24475400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr3:24470200-24475800	Weak transcription	Psoas Muscle	Psoas
10	chr3:24470200-24479000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr3:24472600-24478800	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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