Variant report

Variant	rs2217884
Chromosome Location	chr3:24467202-24467203
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13326381	0.90[EUR][1000 genomes]
rs1865712	0.95[ASN][1000 genomes]
rs2217883	0.89[CEU][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]
rs28369472	0.90[EUR][1000 genomes]
rs35340172	0.81[EUR][1000 genomes]
rs4858613	0.89[CEU][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs59212267	0.95[ASN][1000 genomes]
rs60325252	0.95[ASN][1000 genomes]
rs73032363	0.95[ASN][1000 genomes]
rs73032373	0.95[ASN][1000 genomes]
rs73041705	0.97[ASN][1000 genomes]
rs73041706	0.97[ASN][1000 genomes]
rs9816509	0.85[CEU][hapmap]
rs9839986	0.89[CEU][hapmap];0.88[TSI][hapmap];0.88[EUR][1000 genomes]
rs9841040	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24442000-24469800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:24443800-24475800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:24446000-24476800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:24458400-24469800	Weak transcription	Right Ventricle	heart
5	chr3:24458800-24490200	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:24460800-24476600	Weak transcription	Left Ventricle	heart
7	chr3:24464600-24469800	Weak transcription	Psoas Muscle	Psoas
8	chr3:24464800-24475400	Weak transcription	Aorta	Aorta
9	chr3:24466200-24474600	Weak transcription	Fetal Intestine Small	intestine
10	chr3:24467200-24469000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr3:24467200-24470000	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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