Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:24460201..24461830-chr3:24489473..24491006,2	MCF-7	breast:
2	chr3:24456522..24459959-chr3:24460140..24462139,3	K562	blood:
3	chr3:24459605..24461137-chr3:24536646..24538915,2	MCF-7	breast:
4	chr3:24457456..24460664-chr3:24464456..24466387,3	K562	blood:

Variant related genes	Relation type
ENSG00000151090	Chromatin interaction
ENSG00000228791	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11129152	0.80[EUR][1000 genomes]
rs11918018	0.88[EUR][1000 genomes]
rs12495379	0.81[CEU][hapmap]
rs13065876	0.90[EUR][1000 genomes]
rs13086388	0.88[EUR][1000 genomes]
rs13326381	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17014605	0.81[CEU][hapmap]
rs2135147	0.81[CEU][hapmap]
rs2196430	0.92[ASN][1000 genomes]
rs2217883	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2217884	0.88[EUR][1000 genomes]
rs28369472	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28380451	0.90[EUR][1000 genomes]
rs35340172	0.90[EUR][1000 genomes]
rs4309672	0.88[EUR][1000 genomes]
rs4602332	0.90[EUR][1000 genomes]
rs4858608	0.89[CEU][hapmap]
rs4858613	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9310740	0.81[CEU][hapmap]
rs9816509	0.96[CEU][hapmap]
rs9841040	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9851523	0.81[CEU][hapmap]
rs9852824	0.81[CEU][hapmap]
rs9854304	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9839986	THRB	cis	parietal	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24442000-24469800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:24443800-24475800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:24446000-24476800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:24451400-24460400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr3:24456600-24460400	Weak transcription	Right Atrium	heart
6	chr3:24456800-24460400	Weak transcription	Left Ventricle	heart
7	chr3:24457200-24461400	Enhancers	Liver	Liver
8	chr3:24457800-24461200	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr3:24458000-24460400	Weak transcription	K562	blood
10	chr3:24458000-24462000	Enhancers	Fetal Intestine Small	intestine
11	chr3:24458400-24461600	Weak transcription	Aorta	Aorta
12	chr3:24458400-24469800	Weak transcription	Right Ventricle	heart
13	chr3:24458800-24490200	Weak transcription	Colon Smooth Muscle	Colon
14	chr3:24459000-24462000	Enhancers	Fetal Intestine Large	intestine
15	chr3:24459200-24460400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr3:24459400-24466600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr3:24459800-24461400	Weak transcription	HepG2	liver
18	chr3:24460000-24462000	Enhancers	Psoas Muscle	Psoas

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