Variant report

Variant	rs11129152
Chromosome Location	chr3:24434524-24434525
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24428751..24431920-chr3:24433157..24435631,4	K562	blood:
2	chr3:24421950..24424511-chr3:24434114..24437100,2	K562	blood:
3	chr3:24416630..24419472-chr3:24433631..24435823,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11129150	0.88[EUR][1000 genomes]
rs11918018	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12495379	0.83[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13065876	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13086388	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13326381	0.80[EUR][1000 genomes]
rs1505286	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1505287	0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs1505289	0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs17014597	0.85[ASN][1000 genomes]
rs17014605	0.85[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2135147	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs2217883	0.96[CEU][hapmap];0.80[AMR][1000 genomes]
rs28369472	0.80[EUR][1000 genomes]
rs28380451	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35340172	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4276128	0.88[EUR][1000 genomes]
rs4300958	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4309672	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4423711	0.89[CHB][hapmap];0.86[ASN][1000 genomes]
rs4491844	0.87[ASN][1000 genomes]
rs4541352	0.94[CHB][hapmap];0.85[ASN][1000 genomes]
rs4602332	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4630886	1.00[CHB][hapmap];0.86[JPT][hapmap];0.99[ASN][1000 genomes]
rs4858608	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858610	1.00[CHB][hapmap];0.85[JPT][hapmap];0.99[ASN][1000 genomes]
rs4858613	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs6550865	1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs6769978	0.99[ASN][1000 genomes]
rs6771995	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6786474	0.93[ASN][1000 genomes]
rs7611219	1.00[CHB][hapmap];0.85[JPT][hapmap];0.94[ASN][1000 genomes]
rs7630858	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7648757	0.94[CHB][hapmap];0.86[ASN][1000 genomes]
rs9310739	0.87[EUR][1000 genomes]
rs9310740	0.84[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9816509	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9826887	0.86[EUR][1000 genomes]
rs9839986	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs9851523	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs9852824	0.84[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24420200-24441600	Weak transcription	Liver	Liver
2	chr3:24430400-24437200	Weak transcription	K562	blood
3	chr3:24430600-24443600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:24430800-24434800	Weak transcription	Psoas Muscle	Psoas
5	chr3:24431600-24435800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:24431600-24437800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr3:24431600-24437800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr3:24431600-24438200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr3:24431800-24434600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr3:24431800-24434600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr3:24431800-24442800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:24432000-24434600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr3:24432200-24440800	Weak transcription	Stomach Mucosa	stomach
14	chr3:24432200-24445200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:24432600-24434800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr3:24432600-24442000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr3:24432600-24448400	Weak transcription	Gastric	stomach
18	chr3:24432600-24448600	Weak transcription	Right Ventricle	heart
19	chr3:24432800-24434600	Weak transcription	Colon Smooth Muscle	Colon
20	chr3:24432800-24434600	Weak transcription	Fetal Lung	lung
21	chr3:24432800-24434600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr3:24432800-24434800	Weak transcription	Pancreas	Pancrea
23	chr3:24432800-24434800	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr3:24432800-24434800	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr3:24432800-24435000	Weak transcription	Left Ventricle	heart
26	chr3:24432800-24440800	Weak transcription	Fetal Intestine Large	intestine
27	chr3:24432800-24440800	Weak transcription	Fetal Intestine Small	intestine
28	chr3:24432800-24443200	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr3:24433000-24434600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr3:24433600-24435800	Weak transcription	Aorta	Aorta
31	chr3:24434000-24435400	Enhancers	Fetal Kidney	kidney
32	chr3:24434400-24434800	Enhancers	HepG2	liver

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