Variant report

Variant	rs4300958
Chromosome Location	chr3:24426001-24426002
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24424176..24426720-chr3:24444996..24446867,2	K562	blood:
2	chr3:24421343..24423559-chr3:24425384..24427229,2	K562	blood:
3	chr3:24423095..24424776-chr3:24425281..24426968,2	K562	blood:
4	chr3:24423715..24426307-chr3:24426797..24428623,3	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11129150	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11129152	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11918018	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12495379	0.86[CEU][hapmap];0.84[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13065876	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13086388	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1505286	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1505287	0.85[ASN][1000 genomes]
rs1505289	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17014597	0.85[ASN][1000 genomes]
rs17014605	0.88[CEU][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2135147	0.88[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2217883	0.82[CEU][hapmap]
rs28380451	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35340172	0.94[ASN][1000 genomes]
rs4276128	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4309672	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4423711	0.85[ASN][1000 genomes]
rs4491844	0.87[ASN][1000 genomes]
rs4541352	0.84[ASN][1000 genomes]
rs4602332	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4630886	0.99[ASN][1000 genomes]
rs4858608	0.82[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4858610	0.99[ASN][1000 genomes]
rs4858613	0.82[CEU][hapmap]
rs6550865	0.92[ASN][1000 genomes]
rs6769978	0.99[ASN][1000 genomes]
rs6771995	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6786474	0.92[ASN][1000 genomes]
rs7611219	0.94[ASN][1000 genomes]
rs7630858	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7648757	0.85[ASN][1000 genomes]
rs9310739	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9310740	0.87[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9816509	0.83[CEU][hapmap];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9826887	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9839986	0.82[CEU][hapmap]
rs9851523	0.88[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9852824	0.87[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24394000-24431400	Weak transcription	Gastric	stomach
2	chr3:24412400-24428400	Weak transcription	NHDF-Ad	bronchial
3	chr3:24418000-24429200	Weak transcription	Right Ventricle	heart
4	chr3:24418000-24429800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr3:24418000-24430000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr3:24418200-24429200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr3:24418200-24429800	Weak transcription	Fetal Lung	lung
8	chr3:24419000-24429000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:24419000-24429000	Weak transcription	Pancreas	Pancrea
10	chr3:24419000-24429200	Weak transcription	Left Ventricle	heart
11	chr3:24420200-24426800	Weak transcription	Aorta	Aorta
12	chr3:24420200-24426800	Weak transcription	Fetal Intestine Large	intestine
13	chr3:24420200-24441600	Weak transcription	Liver	Liver
14	chr3:24420600-24427800	Weak transcription	Fetal Intestine Small	intestine
15	chr3:24421200-24429000	Weak transcription	Psoas Muscle	Psoas
16	chr3:24421200-24429800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:24421800-24427800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr3:24422000-24428000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:24422000-24430000	Weak transcription	K562	blood
20	chr3:24423000-24427000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr3:24423400-24428600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr3:24425600-24426200	Enhancers	Placenta Amnion	Placenta Amnion
23	chr3:24425600-24426600	Enhancers	Colon Smooth Muscle	Colon

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