Variant report

Variant	rs28380451
Chromosome Location	chr3:24444751-24444752
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11129150	0.80[EUR][1000 genomes]
rs11129152	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11918018	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12495379	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13065876	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13086388	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13326381	0.88[EUR][1000 genomes]
rs1505286	0.81[ASN][1000 genomes]
rs1505287	0.80[ASN][1000 genomes]
rs1505289	0.81[ASN][1000 genomes]
rs17014597	0.81[ASN][1000 genomes]
rs17014605	0.90[ASN][1000 genomes]
rs2217883	0.87[EUR][1000 genomes]
rs28369472	0.88[EUR][1000 genomes]
rs35340172	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4300958	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4309672	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4331621	0.80[AFR][1000 genomes]
rs4423711	0.89[ASN][1000 genomes]
rs4491844	0.90[ASN][1000 genomes]
rs4541352	0.87[ASN][1000 genomes]
rs4602332	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4630886	0.95[ASN][1000 genomes]
rs4858608	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4858610	0.95[ASN][1000 genomes]
rs4858613	0.88[EUR][1000 genomes]
rs6550865	0.97[ASN][1000 genomes]
rs6769978	0.95[ASN][1000 genomes]
rs6771995	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6786474	0.97[ASN][1000 genomes]
rs7611219	0.99[ASN][1000 genomes]
rs7630858	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7648757	0.89[ASN][1000 genomes]
rs9310740	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9816509	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9839986	0.90[EUR][1000 genomes]
rs9841040	0.83[EUR][1000 genomes]
rs9851523	0.80[EUR][1000 genomes]
rs9852824	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24432200-24445200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:24432600-24448400	Weak transcription	Gastric	stomach
3	chr3:24432600-24448600	Weak transcription	Right Ventricle	heart
4	chr3:24442000-24469800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:24443400-24448400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr3:24443600-24445600	Weak transcription	Liver	Liver
7	chr3:24443600-24457600	Weak transcription	Fetal Lung	lung
8	chr3:24443800-24448000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr3:24443800-24448400	Weak transcription	Colon Smooth Muscle	Colon
10	chr3:24443800-24449800	Weak transcription	Esophagus	oesophagus
11	chr3:24443800-24456400	Weak transcription	Aorta	Aorta
12	chr3:24443800-24456600	Weak transcription	Pancreas	Pancrea
13	chr3:24443800-24457800	Weak transcription	Psoas Muscle	Psoas
14	chr3:24443800-24475800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr3:24444400-24459000	Weak transcription	Fetal Intestine Large	intestine

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