Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11129150	0.95[ASN][1000 genomes]
rs1394761	0.84[ASN][1000 genomes]
rs2135147	0.94[ASN][1000 genomes]
rs28380451	0.80[AFR][1000 genomes]
rs4276128	0.95[ASN][1000 genomes]
rs4423711	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs4491844	0.88[EUR][1000 genomes]
rs4541352	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs4630886	0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60904521	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6550865	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6769978	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6786474	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7611219	0.95[CEU][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7648757	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs9310739	0.92[ASN][1000 genomes]
rs9809150	0.86[ASN][1000 genomes]
rs9826887	0.94[ASN][1000 genomes]
rs9851523	0.94[ASN][1000 genomes]
rs9852824	0.94[ASN][1000 genomes]
rs9861046	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24432200-24445200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:24432600-24448400	Weak transcription	Gastric	stomach
3	chr3:24432600-24448600	Weak transcription	Right Ventricle	heart
4	chr3:24442000-24469800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:24443400-24448400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr3:24443600-24445600	Weak transcription	Liver	Liver
7	chr3:24443600-24457600	Weak transcription	Fetal Lung	lung
8	chr3:24443800-24448000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr3:24443800-24448400	Weak transcription	Colon Smooth Muscle	Colon
10	chr3:24443800-24449800	Weak transcription	Esophagus	oesophagus
11	chr3:24443800-24456400	Weak transcription	Aorta	Aorta
12	chr3:24443800-24456600	Weak transcription	Pancreas	Pancrea
13	chr3:24443800-24457800	Weak transcription	Psoas Muscle	Psoas
14	chr3:24443800-24475800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr3:24444400-24459000	Weak transcription	Fetal Intestine Large	intestine

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