Variant report

Variant	rs9826887
Chromosome Location	chr3:24419747-24419748
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24364862..24367496-chr3:24418521..24420748,2	K562	blood:
2	chr3:24414427..24416637-chr3:24418251..24421032,2	MCF-7	breast:
3	chr3:24417452..24419751-chr3:24421760..24423722,3	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11129150	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11129152	0.86[EUR][1000 genomes]
rs11918018	0.80[EUR][1000 genomes]
rs12495379	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13086388	0.80[EUR][1000 genomes]
rs1394761	0.88[ASN][1000 genomes]
rs1505286	0.96[EUR][1000 genomes]
rs1505289	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs17014605	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2135147	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2217883	0.81[CEU][hapmap]
rs4276128	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4300958	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4309672	0.80[EUR][1000 genomes]
rs4331621	0.94[ASN][1000 genomes]
rs4858608	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs4858613	0.81[CEU][hapmap]
rs60904521	0.81[ASN][1000 genomes]
rs6771995	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7630858	0.88[EUR][1000 genomes]
rs875895	0.81[ASN][1000 genomes]
rs9310739	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9310740	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9809150	0.90[ASN][1000 genomes]
rs9816509	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs9839986	0.81[CEU][hapmap]
rs9851523	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9852824	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9861046	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24394000-24431400	Weak transcription	Gastric	stomach
2	chr3:24412400-24421000	Weak transcription	Right Atrium	heart
3	chr3:24412400-24428400	Weak transcription	NHDF-Ad	bronchial
4	chr3:24413400-24420200	Enhancers	Fetal Intestine Large	intestine
5	chr3:24414200-24423000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr3:24415200-24421200	Weak transcription	HMEC	breast
7	chr3:24416000-24420200	Enhancers	Colon Smooth Muscle	Colon
8	chr3:24416600-24421600	Weak transcription	Fetal Kidney	kidney
9	chr3:24417200-24420200	Enhancers	Liver	Liver
10	chr3:24417600-24420600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr3:24417800-24420000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr3:24417800-24422000	Enhancers	K562	blood
13	chr3:24418000-24429200	Weak transcription	Right Ventricle	heart
14	chr3:24418000-24429800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr3:24418000-24430000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr3:24418200-24421400	Weak transcription	Stomach Mucosa	stomach
17	chr3:24418200-24429200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr3:24418200-24429800	Weak transcription	Fetal Lung	lung
19	chr3:24419000-24420000	Weak transcription	Psoas Muscle	Psoas
20	chr3:24419000-24429000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr3:24419000-24429000	Weak transcription	Pancreas	Pancrea
22	chr3:24419000-24429200	Weak transcription	Left Ventricle	heart
23	chr3:24419200-24420600	Enhancers	Fetal Intestine Small	intestine
24	chr3:24419400-24420000	Enhancers	Rectal Smooth Muscle	rectum
25	chr3:24419400-24420200	Enhancers	Aorta	Aorta
26	chr3:24419400-24420200	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr3:24419600-24420800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr3:24419600-24421000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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