Variant report

Variant	rs11918018
Chromosome Location	chr3:24442236-24442237
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11129150	0.82[EUR][1000 genomes]
rs11129152	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12495379	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13065876	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13067047	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13086388	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13326381	0.86[EUR][1000 genomes]
rs1505286	0.84[ASN][1000 genomes]
rs1505287	0.83[ASN][1000 genomes]
rs1505289	0.84[ASN][1000 genomes]
rs17014597	0.84[ASN][1000 genomes]
rs17014605	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2135147	0.80[EUR][1000 genomes]
rs2217883	0.85[EUR][1000 genomes]
rs28369472	0.86[EUR][1000 genomes]
rs28380451	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35340172	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4276128	0.82[EUR][1000 genomes]
rs4300958	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4309672	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4423711	0.88[ASN][1000 genomes]
rs4491844	0.88[ASN][1000 genomes]
rs4541352	0.87[ASN][1000 genomes]
rs4602332	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4630886	0.97[ASN][1000 genomes]
rs4858608	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4858610	0.97[ASN][1000 genomes]
rs4858613	0.86[EUR][1000 genomes]
rs6550865	0.95[ASN][1000 genomes]
rs6769978	0.97[ASN][1000 genomes]
rs6771995	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6786474	0.95[ASN][1000 genomes]
rs7611219	0.95[ASN][1000 genomes]
rs7630858	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7648757	0.88[ASN][1000 genomes]
rs9310739	0.81[EUR][1000 genomes]
rs9310740	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9816509	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9826887	0.80[EUR][1000 genomes]
rs9839986	0.88[EUR][1000 genomes]
rs9841040	0.81[EUR][1000 genomes]
rs9851523	0.82[EUR][1000 genomes]
rs9852824	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24430600-24443600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:24431800-24442800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:24432200-24445200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:24432600-24448400	Weak transcription	Gastric	stomach
5	chr3:24432600-24448600	Weak transcription	Right Ventricle	heart
6	chr3:24432800-24443200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr3:24435200-24443200	Weak transcription	Psoas Muscle	Psoas
8	chr3:24436000-24443200	Weak transcription	Pancreas	Pancrea
9	chr3:24438600-24443000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr3:24439000-24443000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:24440000-24442400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr3:24440800-24443600	Enhancers	Stomach Mucosa	stomach
13	chr3:24440800-24444400	Enhancers	Fetal Intestine Large	intestine
14	chr3:24440800-24444400	Enhancers	Fetal Intestine Small	intestine
15	chr3:24441000-24442800	Enhancers	Ovary	ovary
16	chr3:24441000-24443200	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr3:24441000-24443800	Enhancers	Colon Smooth Muscle	Colon
18	chr3:24441000-24443800	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr3:24441200-24442400	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr3:24441200-24442800	Enhancers	Aorta	Aorta
21	chr3:24441200-24443200	Weak transcription	Left Ventricle	heart
22	chr3:24441200-24443600	Enhancers	Fetal Lung	lung
23	chr3:24441400-24443800	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr3:24441400-24443800	Enhancers	Brain Germinal Matrix	brain
25	chr3:24441600-24443600	Enhancers	Liver	Liver
26	chr3:24441600-24443800	Enhancers	Fetal Kidney	kidney
27	chr3:24441800-24442800	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr3:24442000-24442600	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr3:24442000-24442800	Enhancers	Stomach Smooth Muscle	stomach
30	chr3:24442000-24443000	Enhancers	Duodenum Mucosa	Duodenum
31	chr3:24442000-24443600	Enhancers	Rectal Smooth Muscle	rectum
32	chr3:24442000-24443600	Enhancers	Hela-S3	cervix
33	chr3:24442000-24469800	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr3:24442200-24443000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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