Variant report

Variant	rs186708609
Chromosome Location	chr12:121458019-121458020
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr12:121457638-121458021	H1-hESC	embryonic stem cell:	n/a	chr12:121457831-121457842
2	USF1	chr12:121457579-121458058	H1-hESC	embryonic stem cell:	n/a	chr12:121457831-121457842

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:121455739..121458547-chr12:121462154..121463997,2	MCF-7	breast:

Variant related genes	Relation type
C12orf43	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521928	chr12:121041728-121761800	Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv1037070	chr12:121069938-121459047	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv899559	chr12:121324727-121592689	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv899560	chr12:121371233-121560581	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv899561	chr12:121376416-121525591	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv899562	chr12:121376416-121565870	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
7	nsv1037195	chr12:121408540-121470375	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
8	esv2758318	chr12:121415845-121584813	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
9	esv2759917	chr12:121415845-121584813	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
10	nsv1039216	chr12:121421701-121538491	Active TSS Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
11	nsv832531	chr12:121440495-121604232	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
12	nsv560454	chr12:121457073-121745742	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121454400-121458200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr12:121454400-121458200	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr12:121454400-121458400	Weak transcription	Spleen	Spleen
4	chr12:121454400-121461600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr12:121454400-121461800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr12:121454400-121462600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr12:121454400-121463200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr12:121454400-121463200	Weak transcription	Small Intestine	intestine
9	chr12:121454400-121463600	Weak transcription	Lung	lung
10	chr12:121454400-121464800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr12:121454400-121471600	Weak transcription	GM12878-XiMat	blood
12	chr12:121454400-121472200	Weak transcription	Primary T cells from cord blood	blood
13	chr12:121454400-121475800	Weak transcription	Adipose Nuclei	Adipose
14	chr12:121454400-121476000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr12:121454400-121476400	Weak transcription	Right Atrium	heart
16	chr12:121454600-121458800	Weak transcription	Liver	Liver
17	chr12:121454600-121461400	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr12:121454600-121462400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr12:121454600-121463400	Weak transcription	Hela-S3	cervix
20	chr12:121454600-121463800	Weak transcription	Colonic Mucosa	Colon
21	chr12:121454600-121470200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr12:121454600-121471000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr12:121454600-121471000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr12:121454600-121471200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr12:121454600-121471600	Weak transcription	Fetal Thymus	thymus
26	chr12:121454600-121476200	Weak transcription	Brain Hippocampus Middle	brain
27	chr12:121454600-121476200	Weak transcription	Gastric	stomach
28	chr12:121454800-121458800	Weak transcription	Stomach Mucosa	stomach
29	chr12:121454800-121461600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr12:121454800-121470400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr12:121454800-121471000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr12:121456400-121458600	Weak transcription	K562	blood
33	chr12:121456800-121459400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr12:121457600-121459200	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr12:121457600-121461600	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr12:121457600-121466000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr12:121457800-121459200	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr12:121458000-121459200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links