Variant report

Variant	rs1867106
Chromosome Location	chr4:78511756-78511757
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7678830	1.00[ASW][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829975	chr4:78426210-78565198	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1867106	CSTB	trans	lymphoblastoid	seeQTL

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78508600-78513800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:78508600-78514400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr4:78508600-78515200	Weak transcription	Spleen	Spleen
4	chr4:78508800-78514200	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr4:78509200-78513800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr4:78510000-78513800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:78510200-78513800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr4:78510600-78514000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr4:78510800-78512200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:78510800-78512200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:78511400-78511800	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr4:78511400-78514200	Enhancers	Liver	Liver
13	chr4:78511600-78512000	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr4:78511600-78512000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr4:78511600-78512000	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr4:78511600-78512200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr4:78511600-78512200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr4:78511600-78512200	Enhancers	H1 Cell Line	embryonic stem cell
19	chr4:78511600-78512200	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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