Variant report

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr4:78522620-78522770	HEEpiC	esophagus:	n/a	n/a
2	CTCF	chr4:78521693-78523000	SK-N-SH	brain:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:78521817..78522700-chr4:78619204..78620028,2	MCF-7	breast:
2	chr4:78306302..78306941-chr4:78521930..78522730,3	MCF-7	breast:
3	chr4:78386033..78387001-chr4:78522641..78523414,2	MCF-7	breast:
4	chr4:78521938..78522727-chr4:78539308..78540406,4	MCF-7	breast:
5	chr4:78522249..78524588-chr4:78525171..78527688,2	MCF-7	breast:

No data

Variant related genes	Relation type
CXCL13	TF binding region
ENSG00000156234	Chromatin interaction

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1867106	1.00[ASW][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829975	chr4:78426210-78565198	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1010104	chr4:78520674-78553754	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7678830	CSTB	trans	lymphoblastoid	seeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78521200-78523600	Enhancers	Liver	Liver
2	chr4:78522200-78523600	Enhancers	HMEC	breast
3	chr4:78522400-78523000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:78522400-78523400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr4:78522400-78523800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:78522600-78523600	Enhancers	NHEK	skin
7	chr4:78522600-78523800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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