Variant report

Variant	rs186787184
Chromosome Location	chrX:139012976-139012977
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chrX:139011779..139014233-chrX:139015121..139017109,2	MCF-7	breast:
2	chrX:139012765..139014914-chrX:139031974..139034930,2	K562	blood:
3	chrX:138956213..138958123-chrX:139012738..139014426,2	MCF-7	breast:
4	chrX:138953765..138955836-chrX:139011529..139013687,2	K562	blood:
5	chrX:138906465..138908031-chrX:139012823..139014377,2	MCF-7	breast:
6	chrX:139003050..139005893-chrX:139011125..139013950,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000101974	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532936	chrX:138687855-139384681	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
2	nsv491760	chrX:138780768-139283477	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	147 gene(s)	inside rSNPs	diseases
3	nsv917353	chrX:138912620-139283492	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	146 gene(s)	inside rSNPs	diseases
4	esv3365935	chrX:139012861-139016459	Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:138998600-139013200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chrX:139003000-139013000	Weak transcription	Fetal Heart	heart
3	chrX:139003000-139013200	Weak transcription	Psoas Muscle	Psoas
4	chrX:139005000-139013200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chrX:139006800-139013200	Weak transcription	Primary T cells fromperipheralblood	blood
6	chrX:139006800-139013200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chrX:139007000-139013200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chrX:139010400-139013200	Weak transcription	Aorta	Aorta
9	chrX:139011000-139016000	Active TSS	GM12878-XiMat	blood
10	chrX:139011800-139013000	Enhancers	Primary T cells from cord blood	blood
11	chrX:139011800-139016800	Active TSS	HepG2	liver
12	chrX:139012000-139013000	Enhancers	Fetal Brain Male	brain
13	chrX:139012000-139013800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
14	chrX:139012000-139016000	Active TSS	NHEK	skin
15	chrX:139012200-139013000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
16	chrX:139012200-139013000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chrX:139012200-139013000	Flanking Active TSS	Liver	Liver
18	chrX:139012200-139013000	Flanking Active TSS	K562	blood
19	chrX:139012200-139013200	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chrX:139012200-139013200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chrX:139012200-139013200	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chrX:139012200-139013200	Enhancers	Colon Smooth Muscle	Colon
23	chrX:139012200-139013200	Enhancers	Right Ventricle	heart
24	chrX:139012200-139013200	Flanking Active TSS	HUVEC	blood vessel
25	chrX:139012200-139013600	Flanking Active TSS	Dnd41	blood
26	chrX:139012200-139016000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chrX:139012200-139016200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
28	chrX:139012200-139016200	Active TSS	NHDF-Ad	bronchial
29	chrX:139012200-139016400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chrX:139012200-139016400	Active TSS	NHLF	lung
31	chrX:139012400-139013000	Weak transcription	Fetal Thymus	thymus
32	chrX:139012400-139013200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chrX:139012400-139013200	Bivalent/Poised TSS	Fetal Kidney	kidney
34	chrX:139012400-139013200	Enhancers	HSMMtube	muscle
35	chrX:139012400-139013400	Weak transcription	Gastric	stomach
36	chrX:139012400-139016200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chrX:139012400-139016400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chrX:139012600-139013000	Flanking Active TSS	H9 Cell Line	embryonic stem cell
39	chrX:139012600-139013000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
40	chrX:139012600-139013000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
41	chrX:139012600-139013000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chrX:139012600-139013000	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
43	chrX:139012600-139013000	Enhancers	Primary B cells from cord blood	blood
44	chrX:139012600-139013000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
45	chrX:139012600-139013000	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chrX:139012600-139013000	Enhancers	Brain Hippocampus Middle	brain
47	chrX:139012600-139013000	Flanking Active TSS	Fetal Intestine Small	intestine
48	chrX:139012600-139013000	Enhancers	Rectal Smooth Muscle	rectum
49	chrX:139012600-139013000	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
50	chrX:139012600-139013000	Flanking Active TSS	HMEC	breast

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