Variant report

Variant	rs186789599
Chromosome Location	chr17:15467710-15467711
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr17:15466126-15467848	GM12892	blood:	n/a	n/a
2	POU2F2	chr17:15467403-15467740	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
TVP23C	TF binding region
TVP23C-CDRT4	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv1055677	chr17:15294011-15561130	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv1059056	chr17:15294011-15856861	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	nsv1058286	chr17:15315763-15561130	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	nsv543213	chr17:15315763-15561130	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv960418	chr17:15441505-15470653	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv457695	chr17:15447364-15611495	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
9	nsv574462	chr17:15447364-15611495	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
10	esv3338046	chr17:15466577-15467725	Active TSS Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15465400-15467800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr17:15465600-15467800	Active TSS	Breast Myoepithelial Primary Cells	Breast
3	chr17:15465600-15467800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr17:15466000-15467800	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr17:15466000-15467800	Active TSS	Rectal Mucosa Donor 29	rectum
6	chr17:15466000-15467800	Active TSS	Skeletal Muscle Female	skeletal muscle
7	chr17:15466200-15467800	Active TSS	Primary T cells from cord blood	blood
8	chr17:15466200-15467800	Active TSS	GM12878-XiMat	blood
9	chr17:15466400-15467800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr17:15466400-15467800	Active TSS	Ovary	ovary
11	chr17:15466400-15467800	Active TSS	Right Atrium	heart
12	chr17:15466400-15467800	Active TSS	Stomach Smooth Muscle	stomach
13	chr17:15466800-15468600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr17:15467200-15468000	Enhancers	Primary hematopoietic stem cells	blood
15	chr17:15467200-15468000	Enhancers	Dnd41	blood
16	chr17:15467400-15467800	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr17:15467400-15467800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
18	chr17:15467400-15467800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
19	chr17:15467400-15467800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
20	chr17:15467400-15467800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
21	chr17:15467400-15467800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
22	chr17:15467400-15467800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
23	chr17:15467400-15467800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr17:15467400-15467800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr17:15467400-15467800	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr17:15467400-15467800	Flanking Active TSS	Adipose Nuclei	Adipose
27	chr17:15467400-15467800	Enhancers	Colon Smooth Muscle	Colon
28	chr17:15467400-15467800	Enhancers	Left Ventricle	heart
29	chr17:15467400-15467800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr17:15467600-15467800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr17:15467600-15467800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr17:15467600-15467800	Enhancers	Primary B cells from cord blood	blood
33	chr17:15467600-15467800	Enhancers	Primary B cells from peripheral blood	blood
34	chr17:15467600-15467800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
35	chr17:15467600-15467800	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr17:15467600-15467800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
37	chr17:15467600-15467800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr17:15467600-15467800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
39	chr17:15467600-15467800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr17:15467600-15467800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr17:15467600-15467800	Enhancers	Liver	Liver
42	chr17:15467600-15467800	Flanking Active TSS	Brain Anterior Caudate	brain
43	chr17:15467600-15467800	Flanking Active TSS	Brain Substantia Nigra	brain
44	chr17:15467600-15467800	Flanking Active TSS	Duodenum Mucosa	Duodenum
45	chr17:15467600-15467800	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr17:15467600-15467800	Enhancers	Fetal Intestine Small	intestine
47	chr17:15467600-15467800	Flanking Active TSS	Fetal Kidney	kidney
48	chr17:15467600-15467800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
49	chr17:15467600-15467800	Enhancers	Small Intestine	intestine
50	chr17:15467600-15467800	Enhancers	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links