Variant report

Variant	rs1868182
Chromosome Location	chr3:143526787-143526788
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs6440197	1.00[CEU][hapmap]
rs6784547	1.00[CEU][hapmap];0.85[TSI][hapmap];0.89[YRI][hapmap];0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72993350	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72993355	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72993357	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv3418674	chr3:143457005-143558357	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1009935	chr3:143497700-143610852	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1001076	chr3:143513526-143547076	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv536747	chr3:143513526-143547076	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143512000-143529200	Weak transcription	Primary B cells from cord blood	blood
2	chr3:143513600-143533600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr3:143514000-143527400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr3:143514200-143544200	Weak transcription	Primary T cells from cord blood	blood
5	chr3:143524200-143533200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr3:143525400-143527400	Weak transcription	Fetal Lung	lung
7	chr3:143525400-143529600	Weak transcription	Primary B cells from peripheral blood	blood
8	chr3:143525800-143527000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:143525800-143527000	Enhancers	Fetal Muscle Trunk	muscle
10	chr3:143525800-143527200	Enhancers	NHLF	lung
11	chr3:143525800-143528800	Enhancers	Fetal Muscle Leg	muscle
12	chr3:143525800-143530800	Enhancers	Fetal Stomach	stomach
13	chr3:143526000-143526800	Weak transcription	NHDF-Ad	bronchial
14	chr3:143526000-143527400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:143526000-143530800	Weak transcription	Small Intestine	intestine
16	chr3:143526200-143528000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr3:143526200-143528000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:143526200-143528600	Weak transcription	Brain Substantia Nigra	brain
19	chr3:143526200-143530400	Enhancers	Colon Smooth Muscle	Colon
20	chr3:143526400-143527200	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr3:143526400-143531200	Weak transcription	Spleen	Spleen
22	chr3:143526600-143526800	Enhancers	Right Atrium	heart

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