Variant report

Variant	rs6784547
Chromosome Location	chr3:143532805-143532806
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143531756..143533614-chr3:143541669..143543725,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1868182	1.00[CEU][hapmap];0.85[TSI][hapmap];0.89[YRI][hapmap];0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6440197	1.00[CEU][hapmap]
rs72993350	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72993355	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72993357	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv3418674	chr3:143457005-143558357	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1009935	chr3:143497700-143610852	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1001076	chr3:143513526-143547076	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv536747	chr3:143513526-143547076	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143513600-143533600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr3:143514200-143544200	Weak transcription	Primary T cells from cord blood	blood
3	chr3:143524200-143533200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr3:143526800-143533000	Weak transcription	Right Atrium	heart
5	chr3:143528400-143533600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr3:143528800-143533400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:143529400-143533000	Weak transcription	NHLF	lung
8	chr3:143529600-143540600	Weak transcription	Brain Angular Gyrus	brain
9	chr3:143529600-143543800	Weak transcription	Stomach Mucosa	stomach
10	chr3:143530000-143533600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr3:143530000-143538800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr3:143530400-143533400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr3:143530400-143533400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr3:143530600-143539800	Weak transcription	Ovary	ovary
15	chr3:143530600-143540600	Weak transcription	Placenta	Placenta
16	chr3:143530800-143533000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:143530800-143540800	Weak transcription	Fetal Stomach	stomach
18	chr3:143531000-143539800	Weak transcription	Adipose Nuclei	Adipose
19	chr3:143531000-143543200	Weak transcription	NHDF-Ad	bronchial
20	chr3:143531200-143533200	Weak transcription	Fetal Lung	lung
21	chr3:143531400-143533000	Weak transcription	Spleen	Spleen
22	chr3:143531400-143533200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr3:143531400-143539000	Weak transcription	Brain Hippocampus Middle	brain
24	chr3:143531800-143539400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr3:143531800-143543200	Weak transcription	Aorta	Aorta
26	chr3:143532000-143533200	Weak transcription	Primary B cells from peripheral blood	blood
27	chr3:143532000-143533400	Weak transcription	Primary B cells from cord blood	blood
28	chr3:143532200-143533000	Weak transcription	Fetal Muscle Leg	muscle
29	chr3:143532800-143533400	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr3:143532800-143533800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
31	chr3:143532800-143534000	Enhancers	GM12878-XiMat	blood
32	chr3:143532800-143534400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:143532800-143534400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links