Variant report

Variant	rs1868883
Chromosome Location	chr11:57842974-57842975
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr11:57842852-57844109	IMR90	lung:	n/a	n/a

Variant related genes	Relation type
ENSG00000254853	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11229262	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1447176	0.97[AFR][1000 genomes]
rs17152341	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2122802	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2122803	1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs2167359	1.00[JPT][hapmap]
rs2441955	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2441967	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2441969	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2441975	1.00[JPT][hapmap]
rs2441978	0.81[AFR][1000 genomes]
rs2443423	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2443424	1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2443436	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2513725	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2514177	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2514178	0.93[EUR][1000 genomes]
rs2514198	0.97[AFR][1000 genomes]
rs3018841	0.89[AFR][1000 genomes]
rs55653906	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55674201	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56058177	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7120369	1.00[EUR][1000 genomes]
rs896299	0.81[AFR][1000 genomes]
rs896301	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv832165	chr11:57806024-58009076	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57826400-57845200	Weak transcription	Pancreas	Pancrea
2	chr11:57838600-57843000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:57838600-57843000	Weak transcription	HepG2	liver
4	chr11:57840800-57847200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:57842800-57844000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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