Variant report

Variant	rs2441955
Chromosome Location	chr11:57792840-57792841
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11229262	0.80[EUR][1000 genomes]
rs1868883	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2122802	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2122803	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2441967	0.87[EUR][1000 genomes]
rs2443423	0.87[EUR][1000 genomes]
rs2443424	0.87[EUR][1000 genomes]
rs2513725	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2514177	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2514178	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs55653906	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55674201	0.80[EUR][1000 genomes]
rs56058177	0.80[EUR][1000 genomes]
rs7120369	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs896301	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	esv2761678	chr11:57768288-57810886	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57787800-57794600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:57791200-57793200	Enhancers	Duodenum Mucosa	Duodenum
3	chr11:57791200-57798200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:57791400-57793400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr11:57791400-57793400	Enhancers	Psoas Muscle	Psoas
6	chr11:57792000-57795400	Weak transcription	Colonic Mucosa	Colon
7	chr11:57792000-57811400	Weak transcription	Right Atrium	heart
8	chr11:57792200-57794400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:57792200-57794600	Weak transcription	Osteobl	bone
10	chr11:57792200-57795400	Weak transcription	Left Ventricle	heart
11	chr11:57792200-57795400	Weak transcription	Pancreas	Pancrea
12	chr11:57792400-57793800	Enhancers	Adipose Nuclei	Adipose
13	chr11:57792400-57794400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:57792400-57794400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:57792400-57794600	Weak transcription	Fetal Lung	lung
16	chr11:57792400-57796800	Weak transcription	Esophagus	oesophagus
17	chr11:57792600-57793000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:57792600-57793600	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr11:57792600-57794400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr11:57792600-57794400	Weak transcription	NHLF	lung
21	chr11:57792600-57794600	Weak transcription	Placenta	Placenta
22	chr11:57792600-57794600	Weak transcription	HSMM	muscle
23	chr11:57792600-57796400	Weak transcription	HSMMtube	muscle
24	chr11:57792800-57794600	Weak transcription	Lung	lung
25	chr11:57792800-57794600	Weak transcription	HepG2	liver
26	chr11:57792800-57795600	Weak transcription	Spleen	Spleen
27	chr11:57792800-57796600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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