Variant report

Variant	rs1870778
Chromosome Location	chr14:25305713-25305714
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10133289	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11623687	0.87[ASN][1000 genomes]
rs4981555	0.85[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs61976832	0.95[ASN][1000 genomes]
rs712491	0.92[ASN][1000 genomes]
rs7143576	0.91[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs766669	0.86[ASN][1000 genomes]
rs854391	0.91[ASN][1000 genomes]
rs854393	0.92[ASN][1000 genomes]
rs854394	1.00[ASN][1000 genomes]
rs854396	0.97[ASN][1000 genomes]
rs854397	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901505	chr14:25237268-25360584	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv901506	chr14:25295551-25377188	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25287400-25306200	Weak transcription	Brain Anterior Caudate	brain
2	chr14:25287800-25306800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr14:25288000-25309400	Weak transcription	Lung	lung
4	chr14:25288400-25309400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr14:25288600-25322800	Weak transcription	Placenta	Placenta
6	chr14:25288800-25308000	Weak transcription	Fetal Lung	lung
7	chr14:25288800-25317400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr14:25289200-25309400	Weak transcription	Pancreas	Pancrea
9	chr14:25298400-25306600	Weak transcription	HSMMtube	muscle
10	chr14:25299000-25309200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr14:25299400-25307400	Weak transcription	Fetal Intestine Large	intestine
12	chr14:25299800-25307800	Weak transcription	Fetal Intestine Small	intestine
13	chr14:25302600-25306600	Weak transcription	Fetal Muscle Leg	muscle
14	chr14:25302800-25306600	Weak transcription	Fetal Heart	heart
15	chr14:25303400-25306600	Weak transcription	Left Ventricle	heart
16	chr14:25303400-25308200	Weak transcription	Right Ventricle	heart
17	chr14:25303600-25311800	Weak transcription	Gastric	stomach
18	chr14:25304600-25309400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr14:25304800-25306600	Weak transcription	HSMM	muscle
20	chr14:25305000-25308000	Enhancers	HepG2	liver
21	chr14:25305200-25308200	Enhancers	Liver	Liver
22	chr14:25305400-25307600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr14:25305400-25309400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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