Variant report

Variant	rs766669
Chromosome Location	chr14:25308699-25308700
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10133289	0.84[ASN][1000 genomes]
rs11623687	0.84[CHB][hapmap];0.81[CHD][hapmap];0.88[JPT][hapmap]
rs1870778	0.86[ASN][1000 genomes]
rs61976832	0.82[ASN][1000 genomes]
rs712491	0.84[CHB][hapmap];0.84[CHD][hapmap]
rs7143576	0.84[CHB][hapmap]
rs854391	0.84[CHB][hapmap];0.86[CHD][hapmap]
rs854394	0.86[ASN][1000 genomes]
rs854396	0.84[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs854397	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901505	chr14:25237268-25360584	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv901506	chr14:25295551-25377188	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs766669	TOX4	cis	parietal	SCAN
rs766669	PNP	cis	parietal	SCAN
rs766669	EDDM3B	cis	cerebellum	SCAN
rs766669	NYNRIN	cis	parietal	SCAN

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25288000-25309400	Weak transcription	Lung	lung
2	chr14:25288400-25309400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:25288600-25322800	Weak transcription	Placenta	Placenta
4	chr14:25288800-25317400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr14:25289200-25309400	Weak transcription	Pancreas	Pancrea
6	chr14:25299000-25309200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr14:25303600-25311800	Weak transcription	Gastric	stomach
8	chr14:25304600-25309400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr14:25305400-25309400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr14:25306600-25309800	Enhancers	HSMMtube	muscle
11	chr14:25306600-25310000	Enhancers	Fetal Heart	heart
12	chr14:25306600-25321200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr14:25306800-25310400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr14:25307200-25309200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr14:25307200-25315000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr14:25307200-25319400	Weak transcription	Fetal Muscle Leg	muscle
17	chr14:25307400-25309400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr14:25307400-25310000	Enhancers	Fetal Intestine Large	intestine
19	chr14:25307600-25309200	Weak transcription	HSMM	muscle
20	chr14:25307600-25309800	Enhancers	Duodenum Mucosa	Duodenum
21	chr14:25307800-25309000	Enhancers	Brain Angular Gyrus	brain
22	chr14:25307800-25309400	Weak transcription	Left Ventricle	heart
23	chr14:25307800-25309800	Enhancers	Fetal Intestine Small	intestine
24	chr14:25308000-25308800	Enhancers	Fetal Lung	lung
25	chr14:25308000-25309000	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr14:25308000-25309400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr14:25308000-25309400	Weak transcription	Right Atrium	heart
28	chr14:25308000-25309600	Enhancers	Brain Substantia Nigra	brain
29	chr14:25308000-25309800	Weak transcription	Hela-S3	cervix
30	chr14:25308000-25309800	Flanking Active TSS	HepG2	liver
31	chr14:25308000-25310000	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr14:25308200-25308800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr14:25308200-25308800	Flanking Active TSS	Liver	Liver
34	chr14:25308200-25308800	Enhancers	Right Ventricle	heart
35	chr14:25308200-25309200	Enhancers	Fetal Brain Female	brain
36	chr14:25308200-25309800	Enhancers	Colonic Mucosa	Colon
37	chr14:25308200-25310000	Enhancers	Brain Hippocampus Middle	brain
38	chr14:25308200-25310000	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr14:25308400-25310000	Enhancers	Stomach Mucosa	stomach
40	chr14:25308400-25315000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr14:25308600-25308800	Enhancers	Pancreatic Islets	Pancreatic Islet
42	chr14:25308600-25309400	Weak transcription	Brain Anterior Caudate	brain
43	chr14:25308600-25309400	Weak transcription	Fetal Brain Male	brain
44	chr14:25308600-25309800	Enhancers	Rectal Mucosa Donor 29	rectum

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