Variant report

Variant	rs1871970
Chromosome Location	chr6:6154697-6154698
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2326705	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2326708	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3024454	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3778359	0.90[CHB][hapmap];0.91[CHD][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs6918368	0.83[ASN][1000 genomes]
rs900402	0.90[CHB][hapmap];0.91[CHD][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs9379013	0.84[CHB][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap];0.82[MEX][hapmap];0.85[ASN][1000 genomes]
rs9392751	0.90[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap];0.94[ASN][1000 genomes]
rs9392752	0.86[JPT][hapmap]
rs9504695	1.00[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031283	chr6:6084559-6160039	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1871970	LY86AS	cis	parietal	SCAN
rs1871970	C6orf201	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:6144000-6163600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr6:6145000-6179800	Weak transcription	HSMM	muscle
3	chr6:6146800-6160200	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr6:6146800-6200400	Weak transcription	Placenta	Placenta
5	chr6:6148400-6156200	Strong transcription	HSMMtube	muscle
6	chr6:6153200-6155600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:6154000-6159600	Weak transcription	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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