Variant report

Variant	rs1872258
Chromosome Location	chr1:102098495-102098496
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1038445	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10493959	0.82[ASN][1000 genomes]
rs10874495	0.87[EUR][1000 genomes]
rs11164265	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11164266	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12091778	0.82[ASN][1000 genomes]
rs12402573	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4907947	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6658759	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6677437	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6677725	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830848	chr1:101930303-102114220	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv3452407	chr1:102096505-102098902	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
3	esv3452408	chr1:102096505-102098902	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:102097800-102099200	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr1:102097800-102099200	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr1:102098000-102098600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:102098000-102098800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr1:102098000-102099000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr1:102098000-102099000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr1:102098000-102099200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr1:102098200-102098600	Weak transcription	Fetal Heart	heart
9	chr1:102098200-102098800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:102098200-102098800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:102098200-102099000	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr1:102098200-102099000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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