Variant report

Variant	rs6677725
Chromosome Location	chr1:102097028-102097029
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1038445	0.87[ASN][1000 genomes]
rs10493959	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10874495	0.82[ASN][1000 genomes]
rs11164265	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11164266	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12091778	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12402573	0.82[ASN][1000 genomes]
rs1385119	0.83[ASN][1000 genomes]
rs1484298	0.83[ASN][1000 genomes]
rs1872258	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4907947	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6658759	0.83[ASN][1000 genomes]
rs6666387	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6677437	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7518371	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830848	chr1:101930303-102114220	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv3452407	chr1:102096505-102098902	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
3	esv3452408	chr1:102096505-102098902	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:102095600-102098000	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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