Variant report

Variant	rs6666387
Chromosome Location	chr1:102053450-102053451
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10493959	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10874495	0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11164266	0.81[ASN][1000 genomes]
rs12091778	0.92[ASN][1000 genomes]
rs12402573	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1385119	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1484298	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6658759	0.80[ASN][1000 genomes]
rs6677437	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6677725	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7518371	0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830848	chr1:101930303-102114220	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:102052800-102055000	Enhancers	Fetal Stomach	stomach
2	chr1:102053200-102053600	Enhancers	HUVEC	blood vessel
3	chr1:102053200-102053800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:102053400-102055200	Weak transcription	Fetal Kidney	kidney

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links