Variant report

Variant	rs1872859
Chromosome Location	chr1:79659418-79659419
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10489655	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12403996	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1555387	0.80[AFR][1000 genomes]
rs186626	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs228553	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55715834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55837267	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58554484	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72680307	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491784	chr1:79146141-79853482	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv830326	chr1:79573379-79735667	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv871182	chr1:79614989-79822735	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv999471	chr1:79650363-79774433	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79658000-79659800	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr1:79658800-79659600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr1:79658800-79659600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr1:79658800-79659600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:79658800-79659600	Enhancers	Primary hematopoietic stem cells	blood
6	chr1:79658800-79659600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:79658800-79659600	Enhancers	GM12878-XiMat	blood
8	chr1:79658800-79659600	Flanking Active TSS	HUVEC	blood vessel
9	chr1:79659000-79659600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr1:79659000-79659600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr1:79659000-79659600	Enhancers	Primary T cells from cord blood	blood
12	chr1:79659000-79659600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr1:79659000-79659600	Enhancers	NHLF	lung
14	chr1:79659000-79659800	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr1:79659200-79659600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:79659200-79659600	Active TSS	Hela-S3	cervix
17	chr1:79659400-79659600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr1:79659400-79659600	Enhancers	Adipose Nuclei	Adipose
19	chr1:79659400-79659600	Enhancers	HMEC	breast
20	chr1:79659400-79659800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr1:79659400-79659800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr1:79659400-79659800	Enhancers	NH-A	brain
23	chr1:79659400-79659800	Enhancers	Osteobl	bone
24	chr1:79659400-79660000	Enhancers	Muscle Satellite Cultured Cells	--
25	chr1:79659400-79664200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr1:79659400-79664200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr1:79659400-79664200	Weak transcription	NHDF-Ad	bronchial

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