Variant report

Variant	rs1873058
Chromosome Location	chr11:45540436-45540437
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10769144	0.83[AFR][1000 genomes]
rs1906583	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2044872	1.00[YRI][hapmap]
rs4755315	0.83[AFR][1000 genomes]
rs7481481	0.83[AFR][1000 genomes]
rs896329	0.83[AFR][1000 genomes]
rs896333	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1045831	chr11:45419113-45580407	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv897310	chr11:45487041-45631953	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45539400-45540600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:45539800-45541600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr11:45540000-45541800	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr11:45540200-45541000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr11:45540200-45541200	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr11:45540200-45541200	Enhancers	Fetal Brain Female	brain
7	chr11:45540200-45541600	Enhancers	Fetal Brain Male	brain
8	chr11:45540200-45560200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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