Variant report

Variant	rs187383653
Chromosome Location	chr9:79124460-79124461
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:79114955..79117396-chr9:79123792..79125800,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893479	chr9:78971253-79275226	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949417	chr9:79078703-79282589	Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv893480	chr9:79115844-79222584	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv437089	chr9:79116975-79139590	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv515152	chr9:79122316-79125140	Weak transcription Strong transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv1805392	chr9:79122346-79125310	Weak transcription Active TSS Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv442155	chr9:79122348-79125310	Weak transcription Enhancers Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv9280	chr9:79124262-79125070	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3505446	chr9:79124320-79124950	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3482346	chr9:79124387-79124921	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3505448	chr9:79124393-79124957	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3505447	chr9:79124435-79124877	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3482345	chr9:79124448-79124899	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv989355	chr9:79124450-79124829	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3482347	chr9:79124456-79124856	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3505444	chr9:79124459-79124883	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv3505443	chr9:79124461-79124894	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79093400-79142800	Weak transcription	Fetal Stomach	stomach
2	chr9:79118600-79126200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:79118600-79134200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr9:79118800-79124600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr9:79118800-79125200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr9:79118800-79125200	Weak transcription	NHDF-Ad	bronchial
7	chr9:79118800-79127600	Weak transcription	HSMMtube	muscle
8	chr9:79118800-79136400	Weak transcription	Gastric	stomach
9	chr9:79118800-79145800	Weak transcription	Primary B cells from peripheral blood	blood
10	chr9:79119000-79125200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:79119200-79124800	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr9:79119200-79125200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr9:79119200-79125200	Weak transcription	NHLF	lung
14	chr9:79119200-79127800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr9:79119200-79134000	Weak transcription	Fetal Intestine Small	intestine
16	chr9:79119800-79130400	Weak transcription	Primary B cells from cord blood	blood
17	chr9:79119800-79132200	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr9:79120000-79127600	Weak transcription	HMEC	breast
19	chr9:79120400-79134000	Weak transcription	Fetal Intestine Large	intestine
20	chr9:79120400-79145200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr9:79120600-79128000	Weak transcription	HSMM	muscle
22	chr9:79120600-79131000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr9:79120800-79131200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr9:79120800-79131400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr9:79121000-79127600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr9:79122000-79124800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr9:79122600-79131400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr9:79122800-79125000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr9:79123200-79125200	Weak transcription	Osteobl	bone
30	chr9:79123800-79125600	Enhancers	Muscle Satellite Cultured Cells	--
31	chr9:79124400-79125200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links