Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1690662	0.83[ASN][1000 genomes]
rs17079862	0.81[EUR][1000 genomes]
rs172212	0.88[AMR][1000 genomes]
rs176014	0.86[AFR][1000 genomes]
rs190756	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs281866	0.84[ASN][1000 genomes]
rs281869	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs281872	0.82[ASN][1000 genomes]
rs283047	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs283051	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs283052	0.88[AMR][1000 genomes]
rs283053	0.90[AMR][1000 genomes]
rs283054	0.88[AMR][1000 genomes]
rs283055	0.88[AMR][1000 genomes]
rs283061	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs283067	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs283083	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2883849	0.82[EUR][1000 genomes]
rs376875	0.83[ASN][1000 genomes]
rs387266	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs413876	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs427027	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs431115	0.81[ASN][1000 genomes]
rs450093	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4945618	0.82[EUR][1000 genomes]
rs9320646	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9385038	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118606600-118613400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr6:118607600-118614000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:118607600-118616000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:118607600-118617000	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:118608200-118613400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:118608400-118613400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:118608400-118613400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr6:118608600-118612800	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:118609000-118616400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:118609400-118612600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:118609800-118616600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:118610000-118614800	Weak transcription	Aorta	Aorta
13	chr6:118610200-118617200	Weak transcription	Left Ventricle	heart
14	chr6:118611200-118612400	Weak transcription	Fetal Heart	heart

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