Variant report

Variant	rs281872
Chromosome Location	chr6:118570990-118570991
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11153725	0.85[CHB][hapmap]
rs12212582	0.83[YRI][hapmap]
rs17079862	0.91[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs176014	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1874082	0.82[ASN][1000 genomes]
rs190756	1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[YRI][hapmap]
rs1923282	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs281861	0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs281864	0.87[ASN][1000 genomes]
rs281866	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs281867	0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs281869	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs283040	0.81[JPT][hapmap]
rs283042	0.83[YRI][hapmap]
rs283046	0.83[YRI][hapmap]
rs283047	0.81[ASN][1000 genomes]
rs283051	0.81[ASN][1000 genomes]
rs283067	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs283083	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2883849	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs387266	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs413876	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.83[ASN][1000 genomes]
rs427027	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs450093	0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4945618	0.91[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7762823	0.85[CHB][hapmap]
rs9320646	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9385038	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9489326	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv428153	chr6:118430517-118586974	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1030089	chr6:118436482-118604516	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538427	chr6:118436482-118604516	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118564800-118576400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:118570000-118571400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr6:118570000-118572200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:118570200-118571200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:118570600-118571000	Enhancers	Primary hematopoietic stem cells	blood
6	chr6:118570600-118571000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:118570600-118571400	Enhancers	HUVEC	blood vessel
8	chr6:118570600-118574000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:118570800-118571000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:118570800-118571200	Enhancers	Fetal Stomach	stomach

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