Variant report

Variant	rs1923282
Chromosome Location	chr6:118612400-118612401
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11153725	0.83[CHB][hapmap]
rs12212582	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs17079862	0.91[CEU][hapmap];0.88[CHB][hapmap]
rs176014	1.00[CEU][hapmap];0.94[CHB][hapmap]
rs190756	1.00[CHB][hapmap]
rs281861	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs281866	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs281867	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs281868	0.83[CHB][hapmap]
rs281869	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs281872	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs283040	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs283042	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs283044	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs283045	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs283046	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs283049	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs283050	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs283062	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs283077	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs283081	0.83[CHB][hapmap]
rs283082	0.83[CHB][hapmap]
rs283083	1.00[CEU][hapmap];0.94[CHB][hapmap]
rs283084	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs283085	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs283086	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs283088	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs283091	0.83[CHB][hapmap]
rs2883849	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs372237	0.88[CHB][hapmap]
rs376875	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs387945	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs397445	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs399844	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs413876	0.95[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs419592	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs422833	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs427027	1.00[CEU][hapmap];0.87[CHB][hapmap]
rs431115	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs445566	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs447193	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs450093	0.91[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs4945618	0.91[CEU][hapmap];0.94[CHB][hapmap]
rs4946333	0.83[CHB][hapmap]
rs4946336	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs6912208	0.81[JPT][hapmap]
rs7762823	0.83[CHB][hapmap]
rs89107	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs9320646	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs9385038	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs9401060	0.83[CHB][hapmap]
rs9489326	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118606600-118613400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr6:118607600-118614000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:118607600-118616000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:118607600-118617000	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:118608200-118613400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:118608400-118613400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:118608400-118613400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr6:118608600-118612800	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:118609000-118616400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:118609400-118612600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:118609800-118616600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:118610000-118614800	Weak transcription	Aorta	Aorta
13	chr6:118610200-118617200	Weak transcription	Left Ventricle	heart
14	chr6:118611200-118612400	Weak transcription	Fetal Heart	heart
15	chr6:118612400-118614600	Enhancers	Fetal Heart	heart

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