Variant report

Variant	rs283077
Chromosome Location	chr6:118569679-118569680
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11758375	0.96[CEU][hapmap];0.88[CHB][hapmap];0.86[EUR][1000 genomes]
rs11968293	0.82[CHB][hapmap]
rs12212582	0.94[CHB][hapmap]
rs1572226	0.81[CHB][hapmap]
rs17079898	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs176014	0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs1923282	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs2065021	0.82[EUR][1000 genomes]
rs281861	0.94[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs281864	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs281867	0.94[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs281868	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs283040	0.94[CHB][hapmap]
rs283042	0.94[CHB][hapmap]
rs283044	0.94[CHB][hapmap]
rs283045	0.94[CHB][hapmap]
rs283046	0.94[CHB][hapmap]
rs283049	0.94[CHB][hapmap]
rs283050	0.94[CHB][hapmap]
rs283062	0.94[CHB][hapmap]
rs283080	0.94[ASN][1000 genomes]
rs283081	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs283082	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs283083	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs283084	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs283085	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs283086	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs283087	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs283088	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs283091	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs372237	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs376875	0.94[CHB][hapmap]
rs387945	0.93[CHB][hapmap]
rs3951016	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs397445	0.94[CHB][hapmap]
rs399844	0.94[CHB][hapmap]
rs419592	0.94[CHB][hapmap]
rs422833	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs427027	0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs431115	0.94[CHB][hapmap]
rs445566	0.94[CHB][hapmap]
rs447193	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4946333	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4946336	0.94[CHB][hapmap]
rs55697000	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6569009	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6912208	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6927800	0.96[CEU][hapmap];0.88[CHB][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72965660	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs731695	0.96[CEU][hapmap];0.88[CHB][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7452622	0.92[CEU][hapmap];0.87[CHB][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7749263	0.93[CEU][hapmap];0.88[CHB][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs89107	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs927348	0.93[CEU][hapmap];0.88[CHB][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9401060	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9489327	0.96[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv428153	chr6:118430517-118586974	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1030089	chr6:118436482-118604516	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538427	chr6:118436482-118604516	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118564800-118576400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:118566800-118570000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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