Variant report

Variant	rs55697000
Chromosome Location	chr6:118594808-118594809
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:118587825..118590155-chr6:118594308..118596431,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11758375	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11758402	0.84[ASN][1000 genomes]
rs17079898	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2065021	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs281868	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs283077	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs283080	0.83[ASN][1000 genomes]
rs283081	0.83[ASN][1000 genomes]
rs283082	0.83[ASN][1000 genomes]
rs283084	0.83[ASN][1000 genomes]
rs283085	0.83[ASN][1000 genomes]
rs283086	0.86[ASN][1000 genomes]
rs283087	0.86[ASN][1000 genomes]
rs283088	0.83[ASN][1000 genomes]
rs283091	0.83[ASN][1000 genomes]
rs372237	0.83[ASN][1000 genomes]
rs422833	0.83[ASN][1000 genomes]
rs4294041	0.85[ASN][1000 genomes]
rs447193	0.83[ASN][1000 genomes]
rs4946333	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6569009	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6912208	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6927800	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6940985	0.82[ASN][1000 genomes]
rs72965660	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs731695	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7452622	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7749263	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs89107	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs927348	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9401060	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9489327	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1030089	chr6:118436482-118604516	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv538427	chr6:118436482-118604516	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118586200-118601400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr6:118588800-118598000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:118589400-118597400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:118589600-118595000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:118594800-118598400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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